Miyakogusa Predicted Gene
- Lj1g3v0246860.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0246860.1 tr|G7KNH7|G7KNH7_MEDTR DNA mismatch repair
protein Msh6-2 OS=Medicago truncatula GN=MTR_6g086270
PE=,78.31,0,MutS_V,DNA mismatch repair protein MutS, C-terminal;
MutS_III,DNA mismatch repair protein MutS,
core,NODE_22791_length_3213_cov_8.453159.path2.1
(1006 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 | c... 1222 0.0
AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-91293... 249 6e-66
AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 | c... 249 7e-66
AT3G18524.1 | Symbols: MSH2, ATMSH2 | MUTS homolog 2 | chr3:6368... 187 3e-47
AT4G25540.1 | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch re... 162 1e-39
AT4G17380.1 | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 | chr4... 141 3e-33
AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:71... 107 6e-23
AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein ho... 101 2e-21
AT5G54090.1 | Symbols: | DNA mismatch repair protein MutS, type... 85 3e-16
AT1G65070.1 | Symbols: | DNA mismatch repair protein MutS, type... 80 7e-15
AT1G65070.2 | Symbols: | DNA mismatch repair protein MutS, type... 80 1e-14
>AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 |
chr3:8912418-8918086 REVERSE LENGTH=1109
Length = 1109
Score = 1222 bits (3162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/1017 (61%), Positives = 756/1017 (74%), Gaps = 25/1017 (2%)
Query: 1 MHKFVKVDDTVNVSQRSHSSNDSFPKPSLSGISIDTNSKGLQKEESAFEPLVKVKDNAFS 60
MHKFVKVDD +RS D P L+ S+ + + + + + +++AFS
Sbjct: 99 MHKFVKVDDRDCSGERSR--EDVVP---LNDSSLCMKANDVIPQFRSNNGKTQERNHAFS 153
Query: 61 FKEKRNLEKVAPVEIIEDDITGPETPGMQPLASHAKRTREEGSKF----CSLRDSGKRVR 116
F + L V + + + D+ GPETPGM+P AS KR E+ F + DS KR++
Sbjct: 154 FSGRAELRSVEDIGV-DGDVPGPETPGMRPRASRLKRVLEDEMTFKEDKVPVLDSNKRLK 212
Query: 117 FLEDLNALDMTKKEAEVASKFEWLYPSLILDASGRRPGDPLYDKTTLYVPPEVMKKMSAS 176
L+D + KKE +KFEWL S I DA+ RRP DPLYD+ TL++PP+V KKMSAS
Sbjct: 213 MLQD--PVCGEKKEVNEGTKFEWLESSRIRDANRRRPDDPLYDRKTLHIPPDVFKKMSAS 270
Query: 177 QKQYWSIKCKYMDVVLFFKVGKFYELYEVDADIGHKELYWKITISGVGKCRQVGISESGI 236
QKQYWS+K +YMD+VLFFKVGKFYELYE+DA++GHKEL WK+T+SGVGKCRQVGISESGI
Sbjct: 271 QKQYWSVKSEYMDIVLFFKVGKFYELYELDAELGHKELDWKMTMSGVGKCRQVGISESGI 330
Query: 237 YFAVQSLVARGYKVGRVEQLETSEEAKARGANSVILRKLVQVVTPSTAVDGNIGPDATHL 296
AVQ L+ARGYKVGR+EQLETS++AKARGAN++I RKLVQV+TPSTA +GNIGPDA HL
Sbjct: 331 DEAVQKLLARGYKVGRIEQLETSDQAKARGANTIIPRKLVQVLTPSTASEGNIGPDAVHL 390
Query: 297 LAIKEGNHGSDDGSVVYGFAFVDCARLRFWVGSIDDDASCSALGALLMQVSPKEVIYESR 356
LAIKE S VYGFAFVDCA LRFWVGSI DDASC+ALGALLMQVSPKEV+Y+S+
Sbjct: 391 LAIKEIKMELQKCSTVYGFAFVDCAALRFWVGSISDDASCAALGALLMQVSPKEVLYDSK 450
Query: 357 GLSKEAQKALRKFSGNGSTTL-LTPV-QSINDLVNTEINDLILSKGYFKGSSDPLDHVMS 414
GLS+EAQKALRK++ GST + L PV Q + D + ++I S GYFKGSS+ + +
Sbjct: 451 GLSREAQKALRKYTLTGSTAVQLAPVPQVMGDTDAAGVRNIIESNGYFKGSSESWNCAVD 510
Query: 415 KVIHREITLSALGGLIGHLDRLMLDDILQNGDLYPYQVYKACLKMDGPTLINLEIFSNSD 474
+ ++ LSALG LI HL RL L+D+L++GD++PYQVY+ CL++DG T++NLEIF+NS
Sbjct: 511 GLNECDVALSALGELINHLSRLKLEDVLKHGDIFPYQVYRGCLRIDGQTMVNLEIFNNSC 570
Query: 475 DGGKSGTLYKYLDNCVTSPGKRLLRNWICCPLKDGEGINNRLDVVDNLIACPEIVSHIAQ 534
DGG SGTLYKYLDNCV+ GKRLLRNWIC PLKD E IN RLDVV+ A E + Q
Sbjct: 571 DGGPSGTLYKYLDNCVSPTGKRLLRNWICHPLKDVESINKRLDVVEEFTANSESMQITGQ 630
Query: 535 HLRKLPDLELLLGRIKSTXXXXXXXXXXXXXXXXXXXRVKVFGSLVKGLRTAXXXXXXXQ 594
+L KLPDLE LLGRIKS+ RVK FG +VKG R+ Q
Sbjct: 631 YLHKLPDLERLLGRIKSSVRSSASVLPALLGKKVLKQRVKAFGQIVKGFRSGIDLLLALQ 690
Query: 595 KEQPLISSLNKVFKLPILTGINGLDKFLTQFEAAVDSDFPNYLNHNVTDSDAXXXXXXXX 654
KE ++S L K+ KLPIL G +GL+ FL+QFEAA+DSDFPNY N +VTD +A
Sbjct: 691 KESNMMSLLYKLCKLPILVGKSGLELFLSQFEAAIDSDFPNYQNQDVTDENAETLTILIE 750
Query: 655 XXXXKAAQWFEVVNAINCIDVLRSFAMASSFSCGTMSRPVIVPRSECTSKD--SGGPVLK 712
+A QW EV++ I+C+DVLRSFA+A+S S G+M+RPVI P SE T ++ + GP+LK
Sbjct: 751 LFIERATQWSEVIHTISCLDVLRSFAIAASLSAGSMARPVIFPESEATDQNQKTKGPILK 810
Query: 713 MKGLWHPFALGESGCLPVPNDIILGENEDRR-----HPCTLLLTGPNMGGKSTLLRATCL 767
++GLWHPFA+ G LPVPNDI+LGE RR HP +LLLTGPNMGGKSTLLRATCL
Sbjct: 811 IQGLWHPFAVAADGQLPVPNDILLGEA--RRSSGSIHPRSLLLTGPNMGGKSTLLRATCL 868
Query: 768 AVIMAQLGCYVPCENCVISVVDIIFTRLGATDRIMAGESTFFIECTETASVLQNATQDSL 827
AVI AQLGCYVPCE+C IS+VD IFTRLGA+DRIM GESTF +ECTETASVLQNATQDSL
Sbjct: 869 AVIFAQLGCYVPCESCEISLVDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSL 928
Query: 828 VILDELGRGTSTFDGYAIAYAVFRHLIEKVNCLLLFATHYHPLTKEFASHPRVTMQHMAC 887
VILDELGRGTSTFDGYAIAY+VFRHL+EKV C +LFATHYHPLTKEFASHPRVT +HMAC
Sbjct: 929 VILDELGRGTSTFDGYAIAYSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMAC 988
Query: 888 AFKSKSDTLSKR-DQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKS 946
AFKS+SD + DQ+LVFLYRL GACPESYGLQVALMAGIP + V AS A+Q MK+S
Sbjct: 989 AFKSRSDYQPRGCDQDLVFLYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRS 1048
Query: 947 IGRTFRSSELRSEFSTLHEEWLKTLMSISRM-EDGKSFDEDVLDTLICLWYELKTSF 1002
IG F+SSELRSEFS+LHE+WLK+L+ ISR+ + ED DTL CLW+E+K+S+
Sbjct: 1049 IGENFKSSELRSEFSSLHEDWLKSLVGISRVAHNNAPIGEDDYDTLFCLWHEIKSSY 1105
>AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-912930
FORWARD LENGTH=1321
Length = 1321
Score = 249 bits (636), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 138/297 (46%), Positives = 184/297 (61%), Gaps = 16/297 (5%)
Query: 662 QWFEVVNAINCIDVLRSFAMASSFSCGTMSRPVIVPRSECTSKDSGGPVLKMKGLWHPFA 721
+W ++V+A +DVL S A AS G RPVI S G P L GL HP
Sbjct: 996 KWRQLVSATAELDVLISLAFASDSYEGVRCRPVI-----SGSTSDGVPHLSATGLGHPVL 1050
Query: 722 LGES---GCLPVPNDIILGENEDRRHPCTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYV 778
G+S G VPN++ +G E +LLTGPNMGGKSTLLR CLAVI+AQ+G V
Sbjct: 1051 RGDSLGRGSF-VPNNVKIGGAE---KASFILLTGPNMGGKSTLLRQVCLAVILAQIGADV 1106
Query: 779 PCENCVISVVDIIFTRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTS 838
P E +S VD I R+GA D IMAG+STF E +ETA +L +AT++SLV+LDELGRGT+
Sbjct: 1107 PAETFEVSPVDKICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTA 1166
Query: 839 TFDGYAIAYAVFRHLIEKVNCLLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSK 898
T DG AIA +V H IEKV C F+THYH L+ ++ ++P+V++ HMAC +
Sbjct: 1167 TSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIGGV-- 1224
Query: 899 RDQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGRTFRSSE 955
+E+ FLYRL GACP+SYG+ VA +AG+P+ + A SQ+ + G+ R ++
Sbjct: 1225 --EEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALYGKNHRKTD 1279
Score = 233 bits (593), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 167/485 (34%), Positives = 250/485 (51%), Gaps = 62/485 (12%)
Query: 115 VRFLEDLNALD---MTKKEAEVASKFEWLYPSLILDASGRRPGDPLYDKTTLYVPPEVMK 171
V+ LED N LD + + A + KF +L +DA RRP D YD TLY+PP+ +K
Sbjct: 320 VKGLED-NVLDGDALARFGARDSEKFRFLG----VDAKRRRPTDENYDPRTLYLPPDFVK 374
Query: 172 KMSASQKQYWSIKCKYMDVVLFFKVGKFYELYEVDADIGHKEL---YWKITISGVGKCRQ 228
K++ Q+Q+W K K+MD V+FFK+GKFYEL+E+DA +G KEL Y K G+
Sbjct: 375 KLTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQYMK------GEQPH 428
Query: 229 VGISESGIYFAVQSLVARGYKVGRVEQLETSEEAKAR-----GANSVILRKLVQVVTPST 283
G E ++ LV +GY+V VEQ ET ++ + R + V+ R++ VVT T
Sbjct: 429 CGFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVKREVCAVVTKGT 488
Query: 284 AVDGNI---GPDATHLLAIKEGNHGSDDGSVVYGFA--FVDCARLRFWVGSIDDDASCSA 338
DG + PDA++L+A+ EG + + + F VD A + +G DD CSA
Sbjct: 489 LTDGEMLLTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVATQKIILGQFKDDQDCSA 548
Query: 339 LGALLMQVSPKEVIYESRGLSKEAQKALRKFSGNGSTTLLTPVQSIND------------ 386
L LL ++ P E+I ++ LS ++ + + + N L P+ D
Sbjct: 549 LSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVPLSEFWDSEKTIYEVGIIY 608
Query: 387 -LVNTEINDLILSKGYFKG-SSDPLDHVMSKVIHRE----ITLSALGGLIGHLDRLMLDD 440
+N + + S+G G S L ++S++ + + LSALGG I +L + LD+
Sbjct: 609 KRINCQPSSAYSSEGKILGDGSSFLPKMLSELATEDKNGSLALSALGGAIYYLRQAFLDE 668
Query: 441 IL---QNGDLYPYQVY-----KACLKMDGPTLINLEIFSNSDDGGKSGTLYKYLDNCVTS 492
L + PY + K + +D L NLEIF NS +GG SGTLY L+ C+T+
Sbjct: 669 SLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENSRNGGYSGTLYAQLNQCITA 728
Query: 493 PGKRLLRNWICCPLKDGEGINNRLDVV-----DNLIACPEIVSHIAQHLRKLPDLELLLG 547
GKRLL+ W+ PL + E I R D V +NL E + L +LPD+E L+
Sbjct: 729 SGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLE----FRKSLSRLPDMERLIA 784
Query: 548 RIKST 552
R+ S+
Sbjct: 785 RMFSS 789
>AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 |
chr4:906079-912930 FORWARD LENGTH=1324
Length = 1324
Score = 249 bits (636), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 138/297 (46%), Positives = 184/297 (61%), Gaps = 16/297 (5%)
Query: 662 QWFEVVNAINCIDVLRSFAMASSFSCGTMSRPVIVPRSECTSKDSGGPVLKMKGLWHPFA 721
+W ++V+A +DVL S A AS G RPVI S G P L GL HP
Sbjct: 999 KWRQLVSATAELDVLISLAFASDSYEGVRCRPVI-----SGSTSDGVPHLSATGLGHPVL 1053
Query: 722 LGES---GCLPVPNDIILGENEDRRHPCTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYV 778
G+S G VPN++ +G E +LLTGPNMGGKSTLLR CLAVI+AQ+G V
Sbjct: 1054 RGDSLGRGSF-VPNNVKIGGAE---KASFILLTGPNMGGKSTLLRQVCLAVILAQIGADV 1109
Query: 779 PCENCVISVVDIIFTRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTS 838
P E +S VD I R+GA D IMAG+STF E +ETA +L +AT++SLV+LDELGRGT+
Sbjct: 1110 PAETFEVSPVDKICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTA 1169
Query: 839 TFDGYAIAYAVFRHLIEKVNCLLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSK 898
T DG AIA +V H IEKV C F+THYH L+ ++ ++P+V++ HMAC +
Sbjct: 1170 TSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIGGV-- 1227
Query: 899 RDQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGRTFRSSE 955
+E+ FLYRL GACP+SYG+ VA +AG+P+ + A SQ+ + G+ R ++
Sbjct: 1228 --EEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALYGKNHRKTD 1282
Score = 230 bits (587), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 167/485 (34%), Positives = 249/485 (51%), Gaps = 59/485 (12%)
Query: 115 VRFLEDLNALD---MTKKEAEVASKFEWLYPSLILDASGRRPGDPLYDKTTLYVPPEVMK 171
V+ LED N LD + + A + KF +L DA RRP D YD TLY+PP+ +K
Sbjct: 320 VKGLED-NVLDGDALARFGARDSEKFRFLGVDR-RDAKRRRPTDENYDPRTLYLPPDFVK 377
Query: 172 KMSASQKQYWSIKCKYMDVVLFFKVGKFYELYEVDADIGHKEL---YWKITISGVGKCRQ 228
K++ Q+Q+W K K+MD V+FFK+GKFYEL+E+DA +G KEL Y K G+
Sbjct: 378 KLTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQYMK------GEQPH 431
Query: 229 VGISESGIYFAVQSLVARGYKVGRVEQLETSEEAKAR-----GANSVILRKLVQVVTPST 283
G E ++ LV +GY+V VEQ ET ++ + R + V+ R++ VVT T
Sbjct: 432 CGFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVKREVCAVVTKGT 491
Query: 284 AVDGNI---GPDATHLLAIKEGNHGSDDGSVVYGFA--FVDCARLRFWVGSIDDDASCSA 338
DG + PDA++L+A+ EG + + + F VD A + +G DD CSA
Sbjct: 492 LTDGEMLLTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVATQKIILGQFKDDQDCSA 551
Query: 339 LGALLMQVSPKEVIYESRGLSKEAQKALRKFSGNGSTTLLTPVQSIND------------ 386
L LL ++ P E+I ++ LS ++ + + + N L P+ D
Sbjct: 552 LSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVPLSEFWDSEKTIYEVGIIY 611
Query: 387 -LVNTEINDLILSKGYFKG-SSDPLDHVMSKVIHRE----ITLSALGGLIGHLDRLMLDD 440
+N + + S+G G S L ++S++ + + LSALGG I +L + LD+
Sbjct: 612 KRINCQPSSAYSSEGKILGDGSSFLPKMLSELATEDKNGSLALSALGGAIYYLRQAFLDE 671
Query: 441 IL---QNGDLYPYQVY-----KACLKMDGPTLINLEIFSNSDDGGKSGTLYKYLDNCVTS 492
L + PY + K + +D L NLEIF NS +GG SGTLY L+ C+T+
Sbjct: 672 SLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENSRNGGYSGTLYAQLNQCITA 731
Query: 493 PGKRLLRNWICCPLKDGEGINNRLDVV-----DNLIACPEIVSHIAQHLRKLPDLELLLG 547
GKRLL+ W+ PL + E I R D V +NL E + L +LPD+E L+
Sbjct: 732 SGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLE----FRKSLSRLPDMERLIA 787
Query: 548 RIKST 552
R+ S+
Sbjct: 788 RMFSS 792
>AT3G18524.1 | Symbols: MSH2, ATMSH2 | MUTS homolog 2 |
chr3:6368151-6372409 REVERSE LENGTH=937
Length = 937
Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/272 (39%), Positives = 157/272 (57%), Gaps = 12/272 (4%)
Query: 673 IDVLRSFAMASSFSCGTMSRPVIVPRSECTSKDSGGPVLKMKGLWHPFALGESGCLPVPN 732
+DVL SFA ++ SC P R E TS D+G VL+ G HP + +PN
Sbjct: 599 MDVLLSFADLAA-SC-----PTPYCRPEITSSDAGDIVLE--GSRHPCVEAQDWVNFIPN 650
Query: 733 DIILGENEDRRHPCTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVISVVDIIF 792
D L R ++TGPNMGGKST +R + V+MAQ+G +VPC+ IS+ D IF
Sbjct: 651 DCRLM----RGKSWFQIVTGPNMGGKSTFIRQVGVIVLMAQVGSFVPCDKASISIRDCIF 706
Query: 793 TRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRH 852
R+GA D + G STF E ETAS+L+ A+ SL+I+DELGRGTST+DG+ +A+A+ H
Sbjct: 707 ARVGAGDCQLRGVSTFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEH 766
Query: 853 LIEKVNCLLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSKRDQELVFLYRLASG 912
L++ LFATH+H LT ++ V+ + A S + ++L LY++ G
Sbjct: 767 LVQVKRAPTLFATHFHELTALAQANSEVSGNTVGVANFHVSAHIDTESRKLTMLYKVEPG 826
Query: 913 ACPESYGLQVALMAGIPEKTVNIASKASQQMK 944
AC +S+G+ VA A PE V +A + + +++
Sbjct: 827 ACDQSFGIHVAEFANFPESVVALAREKAAELE 858
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 106/236 (44%), Gaps = 9/236 (3%)
Query: 308 DGSVVYGFAFVDCARLRFWVGSIDDDASCSALGALLMQVSPKEVIYESRGLSKEAQKALR 367
DG V G A+VD R + DD+ + L + L+ + KE I+ + K+L
Sbjct: 153 DGRCVIGMAYVDLTRRVLGLAEFLDDSRFTNLESSLIALGAKECIFPAESGKSNECKSL- 211
Query: 368 KFSGNGSTTLLTPVQSINDLVNTEINDLILSKGYFKGSSDPLDHVMSKVIHREITLSALG 427
+ ++ + ++ +++ + K KG+ +P+ ++S ++ ALG
Sbjct: 212 -YDSLERCAVMITERKKHEFKGRDLDSDL--KRLVKGNIEPVRDLVSGF---DLATPALG 265
Query: 428 GLIGHLDRLMLDDILQNGDLYPYQVYKACLKMDGPTLINLEIFSNSDDGGKSGTLYKYLD 487
L+ + L +D N + Y + +++D + L + + D K+ +L+ ++
Sbjct: 266 ALLSFSELLSNEDNYGNFTIRRYDI-GGFMRLDSAAMRALNVMESKTDANKNFSLFGLMN 324
Query: 488 -NCVTSPGKRLLRNWICCPLKDGEGINNRLDVVDNLIACPEIVSHIAQHLRKLPDL 542
C GKRLL W+ PL D I RLD+V + + + QHL+++ D+
Sbjct: 325 RTCTAGMGKRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAGLRQDLRQHLKRISDV 380
>AT4G25540.1 | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch repair
protein MSH3 | chr4:13042700-13048115 REVERSE LENGTH=1081
Length = 1081
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 127/219 (57%), Gaps = 8/219 (3%)
Query: 730 VPNDIILGENEDRRHPCTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVISVVD 789
VPND IL + C ++ TGPNMGGKS +R L IMAQ+G +VP + V+D
Sbjct: 799 VPNDTILHAEGEY---CQII-TGPNMGGKSCYIRQVALISIMAQVGSFVPASFAKLHVLD 854
Query: 790 IIFTRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAV 849
+FTR+GA+D I G STF E +E + +++ + SLVILDELGRGTST DG AIAYA
Sbjct: 855 GVFTRMGASDSIQHGRSTFLEELSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYAT 914
Query: 850 FRHLIEKVNCLLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSKRDQELVFLYRL 909
+HL+ + CL+LF THY + + P + + D S ++ +LY+L
Sbjct: 915 LQHLLAEKRCLVLFVTHYPEIAEISNGFPGSVGTYHVSYLTLQKDKGSYDHDDVTYLYKL 974
Query: 910 ASGACPESYGLQVALMAGIP----EKTVNIASKASQQMK 944
G C S+G +VA +A IP + +++A+K +++
Sbjct: 975 VRGLCSRSFGFKVAQLAQIPPSCIRRAISMAAKLEAEVR 1013
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 103/402 (25%), Positives = 170/402 (42%), Gaps = 47/402 (11%)
Query: 164 YVP-PEVMKKMSASQKQYWSIKCKYMDVVLFFKVGKFYELYEVDADIGHKELYWKITISG 222
YVP +K + ++Q +K KY DVVL +VG Y + DA+I + L I
Sbjct: 94 YVPETSSSRKYTPLEQQVVELKSKYPDVVLMVEVGYRYRFFGEDAEIAARVL--GIYAHM 151
Query: 223 VGKCRQVGISESGIYFAVQSLVARGYKVGRVEQLETSEEAKARGANSV--ILRKLVQVVT 280
+ + F V+ LV GYK+G V+Q ET+ K+ GAN R L + T
Sbjct: 152 DHNFMTASVPTFRLNFHVRRLVNAGYKIGVVKQTETAA-IKSHGANRTGPFFRGLSALYT 210
Query: 281 PST-----------AVDGNIGPDATHLLAIKEGNHGSD--------DGSVVYGFAFVDCA 321
+T + G + L+ + + S+ V G V+ +
Sbjct: 211 KATLEAAEDISGGCGGEEGFGSQSNFLVCVVDERVKSETLGCGIEMSFDVRVGVVGVEIS 270
Query: 322 RLRFWVGSIDDDASCSALGALLMQVSPKEVIYESRGLSKEAQKALRKFSGNGSTTLLTPV 381
+D+ S L A+++ +SP E++ + LS++ +K L +G S +
Sbjct: 271 TGEVVYEEFNDNFMRSGLEAVILSLSPAELLL-GQPLSQQTEKFLVAHAGPTSNVRVERA 329
Query: 382 QSINDLVNTEINDLILS------------------KGYFKGSSDPLDHVMSKVIHREITL 423
S++ N D ++S + KG S H + + H +T+
Sbjct: 330 -SLDCFSNGNAVDEVISLCEKISAGNLEDDKEMKLEAAEKGMSCLTVHTIMNMPH--LTV 386
Query: 424 SALGGLIGHLDRLMLDDILQNGDLYPYQVYKACLKMDGPTLINLEIFSNSDDGGKSGTLY 483
AL HL + + IL G + + + TL LE+ N+ DG +SG+L+
Sbjct: 387 QALALTFCHLKQFGFERILYQGASFRSLSSNTEMTLSANTLQQLEVVKNNSDGSESGSLF 446
Query: 484 KYLDNCVTSPGKRLLRNWICCPLKDGEGINNRLDVVDNLIAC 525
+++ +T G RLLR+W+ PL D I+ RLD V + AC
Sbjct: 447 HNMNHTLTVYGSRLLRHWVTHPLCDRNLISARLDAVSEISAC 488
>AT4G17380.1 | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 |
chr4:9708742-9714068 FORWARD LENGTH=792
Length = 792
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 119/215 (55%), Gaps = 16/215 (7%)
Query: 730 VPNDIILGENEDRRHPCTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVISVVD 789
V N I + E + L++ GPNM GKST L+ CL VI+AQ+GCYVP I VVD
Sbjct: 536 VSNSIFMSEATN-----MLVVMGPNMSGKSTYLQQVCLVVILAQIGCYVPARFATIRVVD 590
Query: 790 IIFTRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAV 849
IFTR+G D + + STF E ETA ++QN T SL+++DELGR TS+ DG A+A++
Sbjct: 591 RIFTRMGTMDNLESNSSTFMTEMRETAFIMQNVTNRSLIVMDELGRATSSSDGLAMAWSC 650
Query: 850 FRHLIEKVNCLLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSKRDQELVFLYRL 909
+L+ + +FATH L + +P V + H + RD L F ++L
Sbjct: 651 CEYLL-SLKAYTVFATHMDSLAELATIYPNVKVLHF---------YVDIRDNRLDFKFQL 700
Query: 910 ASGACP-ESYGLQVALMAGIPEKTVNIASKASQQM 943
G YGL +A +AG+P ++ A ++++
Sbjct: 701 RDGTLHVPHYGLLLAEVAGLPSTVIDTARIITKRI 735
>AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 |
chr3:7143546-7150811 FORWARD LENGTH=807
Length = 807
Score = 107 bits (266), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 108/214 (50%), Gaps = 18/214 (8%)
Query: 730 VPNDIILGENEDRRHPCTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVISVVD 789
+PND + +N R H ++TGPN GKS ++ L V ++ +G +VP + + + D
Sbjct: 552 IPNDTEINDN-GRIH----IITGPNYSGKSIYVKQVALIVFLSHIGSFVPADAATVGLTD 606
Query: 790 IIFTRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAV 849
IF +G + + A +STF I+ + +L+ AT SL +LDE G+GT T DG +
Sbjct: 607 RIFCAMG-SKFMTAEQSTFMIDLHQVGMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGT 665
Query: 850 FRHLIEKVNCL----LLFATHYHPLTKE--FASHPRVTMQHMACAFKSKSDTLSKRDQEL 903
H C ++ TH L E ++ M+ + DT S +E+
Sbjct: 666 ISHF---ATCAEPPRVVVCTHLTELLNESCLPVSEKIKFYTMSVL---RPDTESANMEEI 719
Query: 904 VFLYRLASGACPESYGLQVALMAGIPEKTVNIAS 937
VFLYRL G SYGL AL+AG+PE+ V A+
Sbjct: 720 VFLYRLIPGQTLLSYGLHCALLAGVPEEVVKRAA 753
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 112/268 (41%), Gaps = 37/268 (13%)
Query: 314 GFAFVDCAR-----LRFWVGSIDDDASCSALGALLMQVSPKEVIYESRGLSKEAQKALRK 368
G ++ DC+ L FW ++D S L ++ + +IY S + AL++
Sbjct: 25 GVSYYDCSVRQLHVLEFW----EEDCSDFTLINMVKYQAKPSIIYASTKSEESFVAALQQ 80
Query: 369 FSGNGSTTLLTPVQSINDLVNTEINDLILSKGYFKGSSDPLDHVMSKVIH--------RE 420
G TT++ V+S + L+ + G D L+ + ++ + E
Sbjct: 81 NDGTDETTMVKLVKSSTFSYEQAWHRLVYLR--VTGMDDGLN-IKERICYLSSMMDVGSE 137
Query: 421 ITLSALGGLIGHLDRLMLDDILQNGDLYPYQV---------YKACLKMDGPTLINLEIFS 471
+ + GGL+ L+ + + L+ + + LK+D L+IF
Sbjct: 138 VQVRVSGGLLAILESERIVETLEQNESGSASIAIDSVMEVPLNKFLKLDAAAHEALQIFQ 197
Query: 472 NSDDGGKSG--------TLYKYLDNCVTSPGKRLLRNWICCPLKDGEGINNRLDVVDNLI 523
G +++ ++ C T G+RLLR+W P+ D E ++ RL+ + I
Sbjct: 198 TDKHPSHMGIGRAKEGFSVFGMMNKCATPMGRRLLRSWFMRPILDLEVLDRRLNAISFFI 257
Query: 524 ACPEIVSHIAQHLRKLPDLELLLGRIKS 551
+ E+++ + + L+ + D+ LL + S
Sbjct: 258 SSVELMASLRETLKSVKDISHLLKKFNS 285
>AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein
homolog 1 | chr3:8823229-8829571 REVERSE LENGTH=1118
Length = 1118
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 20/194 (10%)
Query: 748 LLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVISVVDIIFTRLGATDRIMAGEST 807
LLTGPN GGKS+LLR+ C A ++ G VP E+ I D I + + D + G+S+
Sbjct: 764 FLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESACIPHFDSIMLHMKSYDSPVDGKSS 823
Query: 808 FFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCLLLFATHY 867
F +E +E S++ AT SLV++DE+ RGT T G IA +V L + CL + +TH
Sbjct: 824 FQVEMSEIRSIVSQATSRSLVLIDEICRGTETAKGTCIAGSVVESL-DTSGCLGIVSTHL 882
Query: 868 H-----PLTKEFASHPRVTMQHMACAFKSKSDTLSKRDQELVFLYRLASGACPESYGLQV 922
H PLT + ++ + +++ K ++L G C ES +
Sbjct: 883 HGIFSLPLTAKNITYKAMGAENVEGQTKPT--------------WKLTDGVCRESLAFET 928
Query: 923 ALMAGIPEKTVNIA 936
A G+PE + A
Sbjct: 929 AKREGVPESVIQRA 942
>AT5G54090.1 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr5:21948283-21952550 REVERSE LENGTH=796
Length = 796
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 17/206 (8%)
Query: 725 SGCLPVPNDIILGENEDRRHPCTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYV-PCENC 783
SG P+P D + + L++TGPN GGK+ L++ LA +MA+ G YV E+
Sbjct: 419 SGAPPIPADFQISKGTR-----VLVITGPNTGGKTICLKSVGLAAMMAKSGLYVLATESA 473
Query: 784 VISVVDIIFTRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGY 843
I D I+ +G ++ STF + + +L ++T SLV+LDE+G GT+ +G
Sbjct: 474 RIPWFDNIYADIGDEQSLLQSLSTFSGHLKQISEILSHSTSRSLVLLDEVGAGTNPLEGA 533
Query: 844 AIAYAVFRHLIEKVNCLLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSKRDQEL 903
A+ A+ E + L + TH+ L T+++ AF++ + D L
Sbjct: 534 ALGMAILESFAESGSLLTMATTHHGELK---------TLKYSNSAFENA--CMEFDDLNL 582
Query: 904 VFLYRLASGACPESYGLQVALMAGIP 929
Y++ G S + +A G+P
Sbjct: 583 KPTYKILWGVPGRSNAINIADRLGLP 608
>AT1G65070.1 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr1:24173132-24176244 REVERSE LENGTH=857
Length = 857
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 145/302 (48%), Gaps = 40/302 (13%)
Query: 708 GPVLKMKGLWHPFALGE-------SGCLPVPNDIILGENEDRRHPCTLLLTGPNMGGKST 760
G + + HP LG PVP DI + + ++++GPN GGK+
Sbjct: 356 GLAVDIDSAQHPLLLGSVLGSPNGGDIFPVPVDIKVESSAK-----VVVISGPNTGGKTA 410
Query: 761 LLRATCLAVIMAQLGCYVPCENCV-ISVVDIIFTRLGATDRIMAGESTFFIECTETASVL 819
LL+ L +M++ G Y+P +NC + D+I +G + STF + +L
Sbjct: 411 LLKTLGLLSLMSKSGMYLPAKNCPRLPWFDLILADIGDPQSLEQSLSTFSGHISRIRQIL 470
Query: 820 QNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCLLLFATHYHPLTKEFASHPR 879
A+++SLV+LDE+ GT +G A+A ++ +++ +VN + + +THY L++ + PR
Sbjct: 471 DIASENSLVLLDEICSGTDPSEGVALATSILQYIKNRVN-VAVVSTHYGDLSRLKDNEPR 529
Query: 880 VTMQHMACAFKSKSDTLSKRDQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKA 939
Q+ A F ++ L +R+ G+ S L+VA G ++ + A K
Sbjct: 530 --FQNAAMEFSMET---------LQPTFRVLWGSTGLSNALRVAKSIGFNKRILENAHKW 578
Query: 940 SQQM--KKSIGRTFRSSELRSEFSTLHEEWLKTLMSISRMEDGKSFDEDVLDTLICLWYE 997
++++ ++ + R S F +L EE K + ++ +F D+++ L++E
Sbjct: 579 TEKLNPEQDVERKG------SLFQSLMEERNKLKLQATKT---AAFHRDLMN----LYHE 625
Query: 998 LK 999
L+
Sbjct: 626 LE 627
>AT1G65070.2 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr1:24173047-24176244 REVERSE LENGTH=876
Length = 876
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 145/302 (48%), Gaps = 40/302 (13%)
Query: 708 GPVLKMKGLWHPFALGE-------SGCLPVPNDIILGENEDRRHPCTLLLTGPNMGGKST 760
G + + HP LG PVP DI + + ++++GPN GGK+
Sbjct: 356 GLAVDIDSAQHPLLLGSVLGSPNGGDIFPVPVDIKVESSAK-----VVVISGPNTGGKTA 410
Query: 761 LLRATCLAVIMAQLGCYVPCENC-VISVVDIIFTRLGATDRIMAGESTFFIECTETASVL 819
LL+ L +M++ G Y+P +NC + D+I +G + STF + +L
Sbjct: 411 LLKTLGLLSLMSKSGMYLPAKNCPRLPWFDLILADIGDPQSLEQSLSTFSGHISRIRQIL 470
Query: 820 QNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCLLLFATHYHPLTKEFASHPR 879
A+++SLV+LDE+ GT +G A+A ++ +++ +VN + + +THY L++ + PR
Sbjct: 471 DIASENSLVLLDEICSGTDPSEGVALATSILQYIKNRVN-VAVVSTHYGDLSRLKDNEPR 529
Query: 880 VTMQHMACAFKSKSDTLSKRDQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKA 939
Q+ A F ++ L +R+ G+ S L+VA G ++ + A K
Sbjct: 530 --FQNAAMEFSMET---------LQPTFRVLWGSTGLSNALRVAKSIGFNKRILENAHKW 578
Query: 940 SQQM--KKSIGRTFRSSELRSEFSTLHEEWLKTLMSISRMEDGKSFDEDVLDTLICLWYE 997
++++ ++ + R S F +L EE K + ++ +F D+++ L++E
Sbjct: 579 TEKLNPEQDVERKG------SLFQSLMEERNKLKLQATKT---AAFHRDLMN----LYHE 625
Query: 998 LK 999
L+
Sbjct: 626 LE 627