Miyakogusa Predicted Gene

Lj1g3v0246830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0246830.1 Non Chatacterized Hit- tr|B8AQA9|B8AQA9_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,45.38,6e-18,PATTERN FORMATION PROTEIN,NULL; GUANYL-NUCLEOTIDE
EXCHANGE FACTOR,NULL; coiled-coil,NULL; seg,NULL,gene.g29068.t1.1
         (338 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19610.1 | Symbols: GNL2 | GNOM-like 2 | chr5:6617746-6622045...   395   e-110
AT5G39500.1 | Symbols: GNL1, ERMO1 | GNOM-like 1 | chr5:15815274...   168   4e-42
AT1G13980.2 | Symbols: GN | sec7 domain-containing protein | chr...   168   5e-42
AT1G13980.1 | Symbols: GN, VAN7, EMB30 | sec7 domain-containing ...   168   5e-42

>AT5G19610.1 | Symbols: GNL2 | GNOM-like 2 | chr5:6617746-6622045
            REVERSE LENGTH=1375
          Length = 1375

 Score =  395 bits (1014), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/341 (56%), Positives = 256/341 (75%), Gaps = 7/341 (2%)

Query: 1    MWKLDKEILDTCHDVISQSMSKIVIEYPANLQTQFGWKSVLNLLSVTWRHPETYDLGIEA 60
            MWK+DKEI++TC+D I++ +SKI+I+Y ANL T  GWKSVL LLS+  RHPET +  ++A
Sbjct: 1034 MWKIDKEIIETCYDTITEFVSKIIIDYSANLHTNIGWKSVLQLLSLCGRHPETKEQAVDA 1093

Query: 61   LITLLS-DGTHVTKTNYAYCIDCAFGCFLAKNSPIEKKKKILDLLADSVKLLVQWHRTQY 119
            LI L+S + +H+++++YAYCIDCAF     +NS +EK  KILDL+ADSV +LV+W++T  
Sbjct: 1094 LIGLMSFNASHLSQSSYAYCIDCAFSFVALRNSSVEKNLKILDLMADSVTMLVKWYKTAS 1153

Query: 120  SDPGSNVXXXXXXXXXXM--EDNSRGPGSANYNMNLFVKLGEAFRRTSLSRQEEIRNHAV 177
            +D  ++              E+N RG    N+  +LF+KL EAFR+T+L+R+EEIRN AV
Sbjct: 1154 TDTANSYSPASNTSSSSSMEENNLRG---VNFVHHLFLKLSEAFRKTTLARREEIRNRAV 1210

Query: 178  YSLHKSFNLA-EELLYLSSNCINYFNLVIFAMVDELHEKMLEYSRRENAEREMRSMEGTL 236
             SL KSF +  E+L +  S CI   + VIF  +D+LHEK+L+YSRRENAEREMRSMEGTL
Sbjct: 1211 TSLEKSFTMGHEDLGFTPSGCIYCIDHVIFPTIDDLHEKLLDYSRRENAEREMRSMEGTL 1270

Query: 237  KLAMELLSDMYLNSLRQIAESPGFRTFWLGILRRMDTCMKADLGHYGPSSLSEIIPDLLK 296
            K+AM++L +++L  L QI ES  FRTFWLG+LRRMDTCMKADLG YG + L E++P+LL 
Sbjct: 1271 KIAMKVLMNVFLVYLEQIVESAEFRTFWLGVLRRMDTCMKADLGEYGDNKLQEVVPELLT 1330

Query: 297  KIITHMKDEGILAPKEDDDMWEITYIQIQWICPALKDELFP 337
             +I  MK++ IL  KEDDD+WEITYIQIQWI PALKDELFP
Sbjct: 1331 TMIGTMKEKEILVQKEDDDLWEITYIQIQWIAPALKDELFP 1371


>AT5G39500.1 | Symbols: GNL1, ERMO1 | GNOM-like 1 |
            chr5:15815274-15819910 FORWARD LENGTH=1443
          Length = 1443

 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 184/338 (54%), Gaps = 22/338 (6%)

Query: 3    KLDKEILDTCHDVISQSMSKIVIEYPANLQTQFGWKSVLNLLSVTWRHPETYDLGIEALI 62
            KL  ++ D   + I+Q + ++V    ++++++ GW+++++LLS+T RHPE  + G EAL 
Sbjct: 1101 KLKAKVADAYCERIAQEVVRLVKANASHVRSRTGWRTIISLLSITARHPEASEAGFEALR 1160

Query: 63   TLLSDGTHVTKTNYAYCIDCAFGCFLAKNSPIEKKKKILDLLADSVKLLVQWHRTQYSDP 122
             ++S+G H+  +NY  C+D A     ++   +++    +DL+++SV  L +W     S  
Sbjct: 1161 FIMSEGAHLLPSNYELCLDAASHFAESRVGEVDRSISAIDLMSNSVFCLARW-----SQE 1215

Query: 123  GSNVXXXXXXXXXXMEDNSRGPGSANYNMNLFVKLGEAFRRTSLSRQEEIRNHAVYSLHK 182
              N            ED  +          +++KL +  ++  L +++E+RNHA+  L +
Sbjct: 1216 AKNSIGETDAMMKLSEDIGK----------MWLKLVKNLKKVCLDQRDEVRNHAISMLQR 1265

Query: 183  SFNLAEELLYLSSNCINYFNLVIFAMVDELHEKMLEYSRRENAEREMRSMEGTLKLAMEL 242
            +   A+ ++         F+  +F ++D++    +E SR+       +++E TL LA +L
Sbjct: 1266 AIAGADGIMLPQPLWFQCFDSAVFILLDDVLTFSIENSRKTLK----KTVEETLVLATKL 1321

Query: 243  LSDMYLNSLRQIAESPGFRTFWLGILRRMDTCMKADLGHYGPSSLSEIIPDLLKKIITHM 302
            +S  +L SL+ I++ P F   W+G+L R++T M  +        ++E+IP+LLK  +  M
Sbjct: 1322 MSKAFLQSLQDISQQPSFCRLWVGVLNRLETYMSTEFRGKRSEKVNELIPELLKNTLLVM 1381

Query: 303  KDEGILAPKED---DDMWEITYIQIQWICPALKDELFP 337
            K  G+L P +D   D  W++T++ +  I P+L+ E+FP
Sbjct: 1382 KATGVLLPGDDIGSDSFWQLTWLHVNKISPSLQSEVFP 1419


>AT1G13980.2 | Symbols: GN | sec7 domain-containing protein |
            chr1:4789587-4794397 FORWARD LENGTH=1451
          Length = 1451

 Score =  168 bits (425), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 185/338 (54%), Gaps = 25/338 (7%)

Query: 3    KLDKEILDTCHDVISQSMSKIVIEYPANLQTQFGWKSVLNLLSVTWRHPETYDLGIEALI 62
            KLD  + D   + I+  +S++V     ++++Q GW+++ +LLS+T RHPE  + G +A+ 
Sbjct: 1110 KLDARVADAYCEQIAIEVSRLVKANANHIRSQAGWRTITSLLSITARHPEASESGFDAVS 1169

Query: 63   TLLSDGTHVTKTNYAYCIDCAFGCFLAKNSPIEKKKKILDLLADSVKLLVQWHRTQYSDP 122
             ++S+GTH+   NY  C+D A     ++    E+  + LDL+ DS++ L +W  +   + 
Sbjct: 1170 FVMSEGTHLYPANYVLCVDAARQFAESRVGQSERSIRALDLMGDSLEFLAKWALSAKENM 1229

Query: 123  GSNVXXXXXXXXXXMEDNSRGPGSANYNMNLFVKLGEAFRRTSLSRQEEIRNHAVYSLHK 182
            G               +   G  S +    ++++L +  R+  L ++E++RNHA+ SL K
Sbjct: 1230 G---------------EEDFGKMSQDIG-EMWLRLVQGLRKVCLDQREDVRNHALQSLQK 1273

Query: 183  SFNLAEELLYLSSNCINYFNLVIFAMVDELHEKMLEYSRRENAEREMRSMEGTLKLAMEL 242
                 + +    S     F+ VIF ++D+L E          ++++ R+MEGTL LA++L
Sbjct: 1274 CLGGVDGINLAHSMWSQCFDKVIFTVLDDLLEIA------AGSQKDYRNMEGTLLLAIKL 1327

Query: 243  LSDMYLNSLRQIAESPGFRTFWLGILRRMDTCMKADLGHYGPSSLSEIIPDLLKKIITHM 302
            LS ++L  L+++++   F   WLG+L RM+  MK  +       L E +P+LLK I+  M
Sbjct: 1328 LSKVFLQQLQELSQLSTFCKLWLGVLTRMEKYMKVKVRGKKSDKLQESVPELLKNILLVM 1387

Query: 303  KDEGILAPKE---DDDMWEITYIQIQWICPALKDELFP 337
            K +G+L  +     D +WE+T++ +  I P+++ ELFP
Sbjct: 1388 KTKGVLLQRSALGGDSLWELTWLHVNNIAPSMRLELFP 1425


>AT1G13980.1 | Symbols: GN, VAN7, EMB30 | sec7 domain-containing
            protein | chr1:4789587-4794397 FORWARD LENGTH=1451
          Length = 1451

 Score =  168 bits (425), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 185/338 (54%), Gaps = 25/338 (7%)

Query: 3    KLDKEILDTCHDVISQSMSKIVIEYPANLQTQFGWKSVLNLLSVTWRHPETYDLGIEALI 62
            KLD  + D   + I+  +S++V     ++++Q GW+++ +LLS+T RHPE  + G +A+ 
Sbjct: 1110 KLDARVADAYCEQIAIEVSRLVKANANHIRSQAGWRTITSLLSITARHPEASESGFDAVS 1169

Query: 63   TLLSDGTHVTKTNYAYCIDCAFGCFLAKNSPIEKKKKILDLLADSVKLLVQWHRTQYSDP 122
             ++S+GTH+   NY  C+D A     ++    E+  + LDL+ DS++ L +W  +   + 
Sbjct: 1170 FVMSEGTHLYPANYVLCVDAARQFAESRVGQSERSIRALDLMGDSLEFLAKWALSAKENM 1229

Query: 123  GSNVXXXXXXXXXXMEDNSRGPGSANYNMNLFVKLGEAFRRTSLSRQEEIRNHAVYSLHK 182
            G               +   G  S +    ++++L +  R+  L ++E++RNHA+ SL K
Sbjct: 1230 G---------------EEDFGKMSQDIG-EMWLRLVQGLRKVCLDQREDVRNHALQSLQK 1273

Query: 183  SFNLAEELLYLSSNCINYFNLVIFAMVDELHEKMLEYSRRENAEREMRSMEGTLKLAMEL 242
                 + +    S     F+ VIF ++D+L E          ++++ R+MEGTL LA++L
Sbjct: 1274 CLGGVDGINLAHSMWSQCFDKVIFTVLDDLLEIA------AGSQKDYRNMEGTLLLAIKL 1327

Query: 243  LSDMYLNSLRQIAESPGFRTFWLGILRRMDTCMKADLGHYGPSSLSEIIPDLLKKIITHM 302
            LS ++L  L+++++   F   WLG+L RM+  MK  +       L E +P+LLK I+  M
Sbjct: 1328 LSKVFLQQLQELSQLSTFCKLWLGVLTRMEKYMKVKVRGKKSDKLQESVPELLKNILLVM 1387

Query: 303  KDEGILAPKE---DDDMWEITYIQIQWICPALKDELFP 337
            K +G+L  +     D +WE+T++ +  I P+++ ELFP
Sbjct: 1388 KTKGVLLQRSALGGDSLWELTWLHVNNIAPSMRLELFP 1425