Miyakogusa Predicted Gene

Lj1g3v0246790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0246790.1 tr|A9SK71|A9SK71_PHYPA Qc-SNARE, plant
SFT1-family OS=Physcomitrella patens subsp. patens GN=SFT1
PE,48.04,2e-19,T_SNARE,Target SNARE coiled-coil domain; SNARE,Target
SNARE coiled-coil domain; no
description,NULL;,NODE_53512_length_859_cov_76.688011.path2.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14600.1 | Symbols:  | Target SNARE coiled-coil domain protei...   204   9e-54
AT1G29060.1 | Symbols:  | Target SNARE coiled-coil domain protei...   179   6e-46

>AT4G14600.1 | Symbols:  | Target SNARE coiled-coil domain protein |
           chr4:8376562-8378078 FORWARD LENGTH=137
          Length = 137

 Score =  204 bits (520), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 95/137 (69%), Positives = 119/137 (86%), Gaps = 5/137 (3%)

Query: 1   MAANSQRPG---SFYGGAAPYRSSDGLSTRPGAASEEIQLRIDPM--DLDDELTGLHSQV 55
           MA+N  R G   S YGGAAPYRS +GLSTR  A SEEIQLRIDPM  DLDDE+TGLH QV
Sbjct: 1   MASNPHRSGAGGSLYGGAAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQV 60

Query: 56  RRLKNVAQEIGTEVKYQKDFLEQLQMTMIKAQAGVKNNLRRLNKSIIQSGSNHIVHVILF 115
           R+LKN+AQEIG+E K+Q+DFL++LQMT+I+AQAGVKNN+R+LN SII+SG+NHI+HV+LF
Sbjct: 61  RQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVLF 120

Query: 116 ALVCFFIVYLWSKMSRK 132
           AL+ FF++Y+WSKM ++
Sbjct: 121 ALLVFFVLYIWSKMFKR 137


>AT1G29060.1 | Symbols:  | Target SNARE coiled-coil domain protein |
           chr1:10147857-10149459 FORWARD LENGTH=134
          Length = 134

 Score =  179 bits (453), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 92/134 (68%), Positives = 115/134 (85%), Gaps = 2/134 (1%)

Query: 1   MAANSQRPGSFYGGAAPYRSSDGLSTRPGAASEEIQLRIDPM--DLDDELTGLHSQVRRL 58
           MA+N    GS YGGA PYRS +GLSTR  + SEEIQLRIDPM  DLDDE+ GLH QVR+L
Sbjct: 1   MASNRGAGGSLYGGADPYRSREGLSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVRQL 60

Query: 59  KNVAQEIGTEVKYQKDFLEQLQMTMIKAQAGVKNNLRRLNKSIIQSGSNHIVHVILFALV 118
           KN+AQEIG+E K Q+DFL++LQMT+I+AQAGVKNN+R+LN SII+SG+NHI+HV+LFAL+
Sbjct: 61  KNIAQEIGSEAKSQRDFLDELQMTLIRAQAGVKNNIRKLNLSIIRSGNNHIMHVVLFALL 120

Query: 119 CFFIVYLWSKMSRK 132
            FFI+Y+WSKM ++
Sbjct: 121 LFFILYMWSKMFKR 134