Miyakogusa Predicted Gene
- Lj1g3v0214250.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0214250.1 56904_g.1
(113 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G34940.2 | Symbols: AtGUS3, GUS3 | glucuronidase 3 | chr5:132... 74 3e-14
AT5G34940.1 | Symbols: AtGUS3, GUS3 | glucuronidase 3 | chr5:132... 73 3e-14
AT5G61250.1 | Symbols: AtGUS1, GUS1 | glucuronidase 1 | chr5:246... 71 1e-13
AT5G61250.2 | Symbols: AtGUS1, GUS1 | glucuronidase 1 | chr5:246... 71 1e-13
AT5G07830.1 | Symbols: AtGUS2, GUS2 | glucuronidase 2 | chr5:250... 62 6e-11
>AT5G34940.2 | Symbols: AtGUS3, GUS3 | glucuronidase 3 |
chr5:13235912-13238718 REVERSE LENGTH=536
Length = 536
Score = 73.6 bits (179), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 41 REEYHLTPKDGNIQSDAVLLNGTPLKLTKSLDIPEMKPLLVDDPSSSPIKVGSHSIVFVH 100
REEYHLT KDGN+ S +LLNG L++ D+P ++P+ ++ S+ PI + +SIVFVH
Sbjct: 469 REEYHLTAKDGNLHSQTMLLNGNALQVNSMGDLPPIEPIHIN--STEPITIAPYSIVFVH 526
Query: 101 LKSFNAPACA 110
+++ PACA
Sbjct: 527 MRNVVVPACA 536
>AT5G34940.1 | Symbols: AtGUS3, GUS3 | glucuronidase 3 |
chr5:13235912-13237799 REVERSE LENGTH=401
Length = 401
Score = 73.2 bits (178), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 41 REEYHLTPKDGNIQSDAVLLNGTPLKLTKSLDIPEMKPLLVDDPSSSPIKVGSHSIVFVH 100
REEYHLT KDGN+ S +LLNG L++ D+P ++P+ ++ S+ PI + +SIVFVH
Sbjct: 334 REEYHLTAKDGNLHSQTMLLNGNALQVNSMGDLPPIEPIHIN--STEPITIAPYSIVFVH 391
Query: 101 LKSFNAPACA 110
+++ PACA
Sbjct: 392 MRNVVVPACA 401
>AT5G61250.1 | Symbols: AtGUS1, GUS1 | glucuronidase 1 |
chr5:24632294-24634597 REVERSE LENGTH=539
Length = 539
Score = 71.2 bits (173), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 41 REEYHLTPKDGNIQSDAVLLNGTPLKLTKSLDIPEMKPLLVDDPSSSPIKVGSHSIVFVH 100
REEYHL+PKDG+++S +LLNG PL T + DIP+++P V SP+ + SI F+
Sbjct: 472 REEYHLSPKDGDLRSKIMLLNGKPLVPTATGDIPKLEP--VRHGVKSPVYINPLSISFIV 529
Query: 101 LKSFNAPACA 110
L +F+APAC+
Sbjct: 530 LPTFDAPACS 539
>AT5G61250.2 | Symbols: AtGUS1, GUS1 | glucuronidase 1 |
chr5:24632294-24634597 REVERSE LENGTH=539
Length = 539
Score = 71.2 bits (173), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 41 REEYHLTPKDGNIQSDAVLLNGTPLKLTKSLDIPEMKPLLVDDPSSSPIKVGSHSIVFVH 100
REEYHL+PKDG+++S +LLNG PL T + DIP+++P V SP+ + SI F+
Sbjct: 472 REEYHLSPKDGDLRSKIMLLNGKPLVPTATGDIPKLEP--VRHGVKSPVYINPLSISFIV 529
Query: 101 LKSFNAPACA 110
L +F+APAC+
Sbjct: 530 LPTFDAPACS 539
>AT5G07830.1 | Symbols: AtGUS2, GUS2 | glucuronidase 2 |
chr5:2504168-2506567 FORWARD LENGTH=543
Length = 543
Score = 62.4 bits (150), Expect = 6e-11, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 11/118 (9%)
Query: 2 SNSTFNVSIVNDMNM-YPPEDTNEGIVLTSI--PISSTDTQI------REEYHLTPKDGN 52
+ S F VS+ N +N+ E + +L ++ P S ++ REEYHLTP++G
Sbjct: 428 NQSDFTVSVSNGINVVLNAESRKKKSLLDTLKRPFSWIGSKASDGYLNREEYHLTPENGV 487
Query: 53 IQSDAVLLNGTPLKLTKSLDIPEMKPLLVDDPSSSPIKVGSHSIVFVHLKSFNAPACA 110
++S ++LNG LK T + DIP ++P+L +SP+ V S+ F+ L +F+A AC+
Sbjct: 488 LRSKTMVLNGKSLKPTATGDIPSLEPVL--RSVNSPLNVLPLSMSFIVLPNFDASACS 543