Miyakogusa Predicted Gene

Lj1g3v0203190.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0203190.1 Non Chatacterized Hit- tr|Q84P89|Q84P89_ORYSJ
Putative uncharacterized protein (Fragment) OS=Oryza
s,41.98,2e-19,coiled-coil,NULL; seg,NULL,CUFF.25346.1
         (144 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49710.2 | Symbols:  | unknown protein; BEST Arabidopsis thal...   114   2e-26
AT5G49710.3 | Symbols:  | unknown protein; BEST Arabidopsis thal...   114   2e-26
AT5G49710.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   108   2e-24
AT4G24590.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    96   8e-21

>AT5G49710.2 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr5:20195561-20196506 FORWARD LENGTH=196
          Length = 196

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 82/140 (58%), Gaps = 13/140 (9%)

Query: 18  KRKTLQAVLEQCQRALELIN-----------NAXXXXXXXXXXXXXXXXXXXXXXXXXXQ 66
           KRKTLQA+L  CQRALEL+N           +                           +
Sbjct: 20  KRKTLQALLNDCQRALELLNLAEVSSEDDEDDKSTGEGSGSQESRGEVSSSDREDPEADE 79

Query: 67  LCDLLKSRVECPDFLQKLECAQASVLLNAAEEGNSWDLVSENDLWEGSELDQ--EDFVLV 124
           L DL+KSRVEC DFL+K+E AQ S   + AE+ +SWD+VSE+DLW+   + Q  ED+VLV
Sbjct: 80  LYDLIKSRVECDDFLEKIESAQVSAPQHLAEDSSSWDVVSEDDLWDDETMAQREEDYVLV 139

Query: 125 RQEDIVEGIACFLAAYLLSL 144
           R+EDI EGIACF+A YL SL
Sbjct: 140 REEDIAEGIACFMATYLQSL 159


>AT5G49710.3 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr5:20195561-20197188 FORWARD LENGTH=235
          Length = 235

 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 82/140 (58%), Gaps = 13/140 (9%)

Query: 18  KRKTLQAVLEQCQRALELIN-----------NAXXXXXXXXXXXXXXXXXXXXXXXXXXQ 66
           KRKTLQA+L  CQRALEL+N           +                           +
Sbjct: 20  KRKTLQALLNDCQRALELLNLAEVSSEDDEDDKSTGEGSGSQESRGEVSSSDREDPEADE 79

Query: 67  LCDLLKSRVECPDFLQKLECAQASVLLNAAEEGNSWDLVSENDLWEGSELDQ--EDFVLV 124
           L DL+KSRVEC DFL+K+E AQ S   + AE+ +SWD+VSE+DLW+   + Q  ED+VLV
Sbjct: 80  LYDLIKSRVECDDFLEKIESAQVSAPQHLAEDSSSWDVVSEDDLWDDETMAQREEDYVLV 139

Query: 125 RQEDIVEGIACFLAAYLLSL 144
           R+EDI EGIACF+A YL SL
Sbjct: 140 REEDIAEGIACFMATYLQSL 159


>AT5G49710.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr5:20195561-20197188 FORWARD LENGTH=234
          Length = 234

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/140 (45%), Positives = 81/140 (57%), Gaps = 14/140 (10%)

Query: 18  KRKTLQAVLEQCQRALELIN-----------NAXXXXXXXXXXXXXXXXXXXXXXXXXXQ 66
           KRKTLQA+L  CQRALEL+N           +                           +
Sbjct: 20  KRKTLQALLNDCQRALELLNLAEVSSEDDEDDKSTGEGSGSQESRGEVSSSDREDPEADE 79

Query: 67  LCDLLKSRVECPDFLQKLECAQASVLLNAAEEGNSWDLVSENDLWEGSELDQ--EDFVLV 124
           L DL+KSRVEC DFL+K+E AQ S   + A+  +SWD+VSE+DLW+   + Q  ED+VLV
Sbjct: 80  LYDLIKSRVECDDFLEKIESAQVSAPQHLAD-SSSWDVVSEDDLWDDETMAQREEDYVLV 138

Query: 125 RQEDIVEGIACFLAAYLLSL 144
           R+EDI EGIACF+A YL SL
Sbjct: 139 REEDIAEGIACFMATYLQSL 158


>AT4G24590.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G49710.3); Has 105 Blast hits to 105 proteins
           in 26 species: Archae - 0; Bacteria - 0; Metazoa - 8;
           Fungi - 3; Plants - 85; Viruses - 0; Other Eukaryotes -
           9 (source: NCBI BLink). | chr4:12696651-12698036 FORWARD
           LENGTH=241
          Length = 241

 Score = 95.9 bits (237), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 78/139 (56%), Gaps = 12/139 (8%)

Query: 18  KRKTLQAVLEQCQRALELIN----------NAXXXXXXXXXXXXXXXXXXXXXXXXXXQL 67
           KRKTLQ +L  CQRALEL+           +                           + 
Sbjct: 27  KRKTLQNLLADCQRALELLELPGDENGGEQSESPEEEEEEESDREEPSASDPGDPEADKF 86

Query: 68  CDLLKSRVECPDFLQKLECAQASVLLNAAEEGNSWDLVSENDLWEGSELDQ--EDFVLVR 125
            DL+KSRVEC DF +K+E AQ SV    AE+ +SWD+VSE+DLW+   + Q  +D+V+VR
Sbjct: 87  YDLIKSRVECNDFREKIELAQVSVPQVLAEDSSSWDVVSEDDLWDEECVGQTEDDYVVVR 146

Query: 126 QEDIVEGIACFLAAYLLSL 144
           +EDI +GIACF+A YL SL
Sbjct: 147 EEDIADGIACFMATYLSSL 165