Miyakogusa Predicted Gene

Lj1g3v0183010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0183010.1 Non Chatacterized Hit- tr|G3NZ37|G3NZ37_GASAC
Uncharacterized protein (Fragment) OS=Gasterosteus
acu,35.58,2e-18,seg,NULL; AhpC-TSA_2,NULL,CUFF.25341.1
         (397 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37240.1 | Symbols:  | Thioredoxin superfamily protein | chr2...    64   2e-10

>AT2G37240.1 | Symbols:  | Thioredoxin superfamily protein |
           chr2:15640235-15641720 REVERSE LENGTH=248
          Length = 248

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 19/168 (11%)

Query: 225 SELWRDKPAVFLCLRRPGCIMCRAEAYKLYSRKPIFDALGVQLFAVLHEHIESEVKDFWP 284
           S+LW+D+ AV    R  GC++CR  A  L  +K + DA GV L  +    I+        
Sbjct: 87  SDLWKDRKAVVAFARHFGCVLCRKRAAYLAEKKDVMDASGVALVLIGPGSIDQANTFVEQ 146

Query: 285 RYWGGAILFDRGRNFFQALGGGKLLKEKFFSG--FLLNPRAIANYKRAKASGFQQNFKGE 342
             + G +  D     ++AL        +F SG      P+A      +   G++Q++K  
Sbjct: 147 TKFKGEVYADPNHASYEAL--------EFVSGVSVTFTPKAAMKILESYMEGYRQDWKLS 198

Query: 343 ---------GEVKGGLFILGSGRSGIAYQFIERNFGDWAPLAEVIEIC 381
                    G  +GG+ + G G+  I+Y   ++  GD  P+ E+++ C
Sbjct: 199 FMKDTVERGGWQQGGILVAGPGKDNISYIRKDKEAGDDPPVEEILKAC 246