Miyakogusa Predicted Gene

Lj1g3v0180960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0180960.1 tr|I3S8P2|I3S8P2_LOTJA Transcription initiation
factor IIA subunit 2 OS=Lotus japonicus PE=3
SV=1,100,1.4013e-45,Transcription factor IIA (TFIIA), alpha-helical
domain,Transcription factor IIA, helical; Transcript,CUFF.25338.1
         (89 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24440.2 | Symbols:  | transcription initiation factor IIA ga...   177   1e-45
AT4G24440.1 | Symbols:  | transcription initiation factor IIA ga...   177   1e-45

>AT4G24440.2 | Symbols:  | transcription initiation factor IIA
          gamma chain / TFIIA-gamma (TFIIA-S) |
          chr4:12633460-12634553 FORWARD LENGTH=106
          Length = 106

 Score =  177 bits (449), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 82/89 (92%), Positives = 88/89 (98%)

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALE+QVK+KVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDALFKNEDNQE 89
          GHLHTYRFCDNVWTFILQDA+FK++D QE
Sbjct: 61 GHLHTYRFCDNVWTFILQDAMFKSDDRQE 89


>AT4G24440.1 | Symbols:  | transcription initiation factor IIA
          gamma chain / TFIIA-gamma (TFIIA-S) |
          chr4:12633460-12634553 FORWARD LENGTH=106
          Length = 106

 Score =  177 bits (449), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 82/89 (92%), Positives = 88/89 (98%)

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALE+QVK+KVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDALFKNEDNQE 89
          GHLHTYRFCDNVWTFILQDA+FK++D QE
Sbjct: 61 GHLHTYRFCDNVWTFILQDAMFKSDDRQE 89