Miyakogusa Predicted Gene

Lj1g3v0178870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0178870.1 Non Chatacterized Hit- tr|B9SMY7|B9SMY7_RICCO
Lyase, putative OS=Ricinus communis GN=RCOM_0482760
PE,54.05,9e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; Rhamnogal_lyase,Rhamnogalacturonate lyase,CUFF.25334.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24430.1 | Symbols:  | Rhamnogalacturonate lyase family prote...   160   2e-40
AT1G09890.1 | Symbols:  | Rhamnogalacturonate lyase family prote...   160   2e-40
AT1G09910.1 | Symbols:  | Rhamnogalacturonate lyase family prote...   147   3e-36
AT2G22620.1 | Symbols:  | Rhamnogalacturonate lyase family prote...   115   6e-27
AT4G37950.1 | Symbols:  | Rhamnogalacturonate lyase family prote...   114   2e-26
AT1G09880.1 | Symbols:  | Rhamnogalacturonate lyase family prote...   112   6e-26
AT4G38030.1 | Symbols:  | Rhamnogalacturonate lyase family prote...   107   3e-24
AT2G22620.2 | Symbols:  | Rhamnogalacturonate lyase family prote...    60   5e-10

>AT4G24430.1 | Symbols:  | Rhamnogalacturonate lyase family protein
           | chr4:12630018-12632975 FORWARD LENGTH=646
          Length = 646

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 73/136 (53%), Positives = 94/136 (69%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVWSKAGSTGTTGTQERI 60
           M NG ++V  S P GF+T I Y G+DNLLE  N+  NRGYWDLVWS  G+ GTTG  ERI
Sbjct: 18  MGNGKVKVTISKPDGFVTGISYQGVDNLLETHNEDFNRGYWDLVWSDEGTPGTTGKSERI 77

Query: 61  VGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLKE 120
            G  F             F++ WD S + +++P+N+D+R++M ++ +GFYSYAIFEHL E
Sbjct: 78  KGTSFEVVVENEELVEISFSRKWDSSLQDSIAPINVDKRFIMRKDVTGFYSYAIFEHLAE 137

Query: 121 WPAFNIPQIRIVYKLR 136
           WPAFN+PQ RIVYKLR
Sbjct: 138 WPAFNLPQTRIVYKLR 153


>AT1G09890.1 | Symbols:  | Rhamnogalacturonate lyase family protein
           | chr1:3214237-3217386 REVERSE LENGTH=617
          Length = 617

 Score =  160 bits (405), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 94/136 (69%), Gaps = 3/136 (2%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVWSKAGSTGTTGTQERI 60
           MDNGI +V  S P G +T I+YNGIDNLLEVLN+  NRGYWDLVW   G +GT G  + I
Sbjct: 1   MDNGIARVTLSKPDGIVTGIEYNGIDNLLEVLNEEVNRGYWDLVW---GGSGTAGGFDVI 57

Query: 61  VGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLKE 120
            G  F             FT+ WDPSQ+G   PLNID+R+VML  SSGFY+YAI+EHLKE
Sbjct: 58  KGSNFEVIVKNEEQIELSFTRKWDPSQEGKAVPLNIDKRFVMLSGSSGFYTYAIYEHLKE 117

Query: 121 WPAFNIPQIRIVYKLR 136
           WPAF++ + RI +KLR
Sbjct: 118 WPAFSLAETRIAFKLR 133


>AT1G09910.1 | Symbols:  | Rhamnogalacturonate lyase family protein
           | chr1:3220151-3224451 REVERSE LENGTH=675
          Length = 675

 Score =  147 bits (370), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/136 (52%), Positives = 87/136 (63%), Gaps = 3/136 (2%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVWSKAGSTGTTGTQERI 60
           MDNGILQV  S PGG IT I+YNGIDN+LEV N   NRGYWDL W++ G  G     + I
Sbjct: 60  MDNGILQVTLSKPGGIITGIEYNGIDNVLEVRNKETNRGYWDLHWNEPGGKGIF---DVI 116

Query: 61  VGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLKE 120
            G  F             F + WDPS +G   PLNID+R++MLR SSG YSY I+EHLK+
Sbjct: 117 SGVTFRVIVETEEQVEISFLRTWDPSLEGKYIPLNIDKRFIMLRGSSGVYSYGIYEHLKD 176

Query: 121 WPAFNIPQIRIVYKLR 136
           WP F + + RI +KLR
Sbjct: 177 WPGFELGETRIAFKLR 192


>AT2G22620.1 | Symbols:  | Rhamnogalacturonate lyase family protein
           | chr2:9604902-9610156 REVERSE LENGTH=677
          Length = 677

 Score =  115 bits (289), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 85/135 (62%), Gaps = 5/135 (3%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVWSKAGSTGTTGTQERI 60
           +DNGI+QV FSNP G IT I+Y+GIDN+L+  +  ++RGYWD+VW +      T   +++
Sbjct: 64  VDNGIVQVTFSNPEGLITGIKYHGIDNVLD--DKIDDRGYWDVVWYEPEKKQKT---DKL 118

Query: 61  VGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLKE 120
            G +F             FT+ W  S++G+L PLN+D+RY++    SG Y Y I E L+ 
Sbjct: 119 EGTKFEIITQNEEQIEISFTRTWTISRRGSLVPLNVDKRYIIRSGVSGLYMYGILERLEG 178

Query: 121 WPAFNIPQIRIVYKL 135
           WP  ++ QIRIV+KL
Sbjct: 179 WPDVDMDQIRIVFKL 193


>AT4G37950.1 | Symbols:  | Rhamnogalacturonate lyase family protein
           | chr4:17844792-17849156 FORWARD LENGTH=678
          Length = 678

 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 86/136 (63%), Gaps = 9/136 (6%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDS-NNRGYWDLVWSKAGSTGTTGTQER 59
           +DNGI+ V FS+P G ITRI+YNG++N   VLND   NRGYWD+VW K G   +T   + 
Sbjct: 63  VDNGIIDVTFSSPQGLITRIKYNGLNN---VLNDQIENRGYWDVVWYKPGQVSST---DY 116

Query: 60  IVGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLK 119
           +VG +F             F++ +  SQ+G+  PLN+D+RY++ R  SG Y YA+ E L 
Sbjct: 117 LVGTKFDIVNQTSEQIEISFSRTF--SQRGSGIPLNVDKRYIIRRGVSGIYMYAVLERLI 174

Query: 120 EWPAFNIPQIRIVYKL 135
            WP  ++ QIRIV+KL
Sbjct: 175 GWPDVDMDQIRIVFKL 190


>AT1G09880.1 | Symbols:  | Rhamnogalacturonate lyase family protein
           | chr1:3208828-3211653 REVERSE LENGTH=631
          Length = 631

 Score =  112 bits (281), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 64/138 (46%), Positives = 86/138 (62%), Gaps = 4/138 (2%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEV-LNDSNNRGYWDLVWS--KAGSTGTTGTQ 57
           M+N  LQ+  SNP GF+T IQYNGIDN+L    N   +RGYWD+VW+     +  T GT 
Sbjct: 1   MENRFLQLTLSNPEGFVTGIQYNGIDNVLAYYTNKEYDRGYWDVVWNFPGKKAKKTKGTL 60

Query: 58  ERIVGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEH 117
           +RI   +              FT+ W+ S    + P+NID+R+VML+NSSGFYSYAIFE 
Sbjct: 61  DRIEATKMEVITQNDEKIELSFTRTWNTSSTTAV-PVNIDKRFVMLQNSSGFYSYAIFER 119

Query: 118 LKEWPAFNIPQIRIVYKL 135
           L+ WPA  +  +R+V+KL
Sbjct: 120 LQGWPAVELDNMRLVFKL 137


>AT4G38030.1 | Symbols:  | Rhamnogalacturonate lyase family protein
           | chr4:17863206-17866730 REVERSE LENGTH=667
          Length = 667

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 80/135 (59%), Gaps = 8/135 (5%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVWSKAGSTGTTGTQERI 60
           +DNGI++V FSNP G IT I+Y GIDN+L       +RGYWD+ W   G+    G  +RI
Sbjct: 56  VDNGIIRVSFSNPQGLITGIKYKGIDNVLH--PHLRDRGYWDITWQ--GTNIRQGGLDRI 111

Query: 61  VGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLKE 120
            G  F             F++ W   + G++ PLN+D+RY++ RN+SG Y Y IFE L E
Sbjct: 112 EGTNFRIITQTQEQVEISFSRTW---EDGHI-PLNVDKRYIIRRNTSGIYMYGIFERLPE 167

Query: 121 WPAFNIPQIRIVYKL 135
           WP  ++  IRI +KL
Sbjct: 168 WPELDMGLIRIAFKL 182


>AT2G22620.2 | Symbols:  | Rhamnogalacturonate lyase family protein
           | chr2:9604902-9610156 REVERSE LENGTH=597
          Length = 597

 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 37/45 (82%), Gaps = 2/45 (4%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVW 45
           +DNGI+QV FSNP G IT I+Y+GIDN+L+  +  ++RGYWD+VW
Sbjct: 64  VDNGIVQVTFSNPEGLITGIKYHGIDNVLD--DKIDDRGYWDVVW 106