Miyakogusa Predicted Gene

Lj1g3v0177840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0177840.1 tr|Q08BZ9|Q08BZ9_DANRE Zgc:153893 OS=Danio rerio
GN=zgc:153893 PE=2 SV=1,40.15,3e-19,TRAF-TYPE ZINC FINGER
PROTEIN-RELATED,NULL; zf-TRAF,NULL; TRAF domain-like,TRAF-like;
seg,NULL,CUFF.25331.1
         (203 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09920.1 | Symbols:  | TRAF-type zinc finger-related | chr1:3...   272   1e-73
AT4G15420.1 | Symbols:  | Ubiquitin fusion degradation UFD1 fami...    69   2e-12

>AT1G09920.1 | Symbols:  | TRAF-type zinc finger-related |
           chr1:3224863-3226860 REVERSE LENGTH=192
          Length = 192

 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/198 (66%), Positives = 153/198 (77%), Gaps = 6/198 (3%)

Query: 1   MEAGSDQATSVCTHCDRAIPAANIDLHSVHCARNLEKCKVCGDMVPRKHAEDHYLSTHAP 60
           ME  + + T VC HCDR IP+ NIDLH VHCARNLEKCK+CGDMVP+KHAE+HYL+THAP
Sbjct: 1   METATGEITIVCNHCDRDIPSLNIDLHRVHCARNLEKCKICGDMVPKKHAEEHYLNTHAP 60

Query: 61  VSCSLCSETMQRDILDIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYLCN 120
           ++CS+C ET++R+I D HKGE CP+RIVTCEFCEFPLPAVDLAEHQEVCGNRTELCY CN
Sbjct: 61  IACSMCKETIEREIFDSHKGEICPKRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYQCN 120

Query: 121 KYVRLRERFSHEARCNGVQDNTVGSSRNVREAERDEGXXXXXXXXQQNDFSTRRLLITIA 180
            YVRLRER++HE +C G    TV SSR +  A   EG          N  S +RL  TIA
Sbjct: 121 SYVRLRERYNHETKCPG----TVESSRRIPRAA--EGDGNGRRRRDGNGVSNKRLFFTIA 174

Query: 181 ITGIAVILGSIFLQKKAE 198
           ITGIAVI+GS+F Q+K E
Sbjct: 175 ITGIAVIIGSLFFQRKPE 192


>AT4G15420.1 | Symbols:  | Ubiquitin fusion degradation UFD1 family
           protein | chr4:8823822-8825949 FORWARD LENGTH=561
          Length = 561

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 32/168 (19%)

Query: 1   MEAGSDQATSVCTHCDRAIPAANIDLHSVHCAR--------------------NLEKCKV 40
           + + SD  T  C +C  +IP+ +I LH V+C+R                    N   C+ 
Sbjct: 392 VSSSSDVDTVECRNCKHSIPSRSIALHEVYCSRHNVVCNHHGCGIVLRVEEAKNHLHCEK 451

Query: 41  CGDMVPRKHAEDHYLSTHAPVSCSLCSETMQRDILDIHKGENCPQRIVTCEFC----EFP 96
           CG  +     E H    H P++C  C   ++++ +  H+G++CP R++ C FC    E  
Sbjct: 452 CGKALQPTEMEKHLKVFHEPLTCG-CGIVLEKEQMVQHQGKDCPLRLIACRFCGDMVEAG 510

Query: 97  LPAVD-------LAEHQEVCGNRTELCYLCNKYVRLRERFSHEARCNG 137
             A D       ++EH+  CG+RT  C  C + V L++   H+   +G
Sbjct: 511 NSAADTRDRMRGMSEHESTCGSRTAPCDSCGRSVMLKDMDIHQIAVHG 558