Miyakogusa Predicted Gene

Lj1g3v0173680.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0173680.2 tr|G7K5Z4|G7K5Z4_MEDTR Serine
hydroxymethyltransferase OS=Medicago truncatula GN=MTR_5g067060 PE=3
S,91.77,0,PLP-dependent transferases,Pyridoxal phosphate-dependent
transferase, major domain; SUBFAMILY NOT NA,CUFF.25317.2
         (243 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37930.1 | Symbols: SHM1, STM, SHMT1 | serine transhydroxymet...   434   e-122
AT5G26780.1 | Symbols: SHM2 | serine hydroxymethyltransferase 2 ...   429   e-120
AT5G26780.2 | Symbols: SHM2 | serine hydroxymethyltransferase 2 ...   420   e-118
AT5G26780.3 | Symbols: SHM2 | serine hydroxymethyltransferase 2 ...   420   e-118
AT4G32520.2 | Symbols: SHM3 | serine hydroxymethyltransferase 3 ...   279   1e-75
AT4G32520.1 | Symbols: SHM3, AtSHMT3 | serine hydroxymethyltrans...   279   1e-75
AT4G13930.1 | Symbols: SHM4 | serine hydroxymethyltransferase 4 ...   261   2e-70
AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate ...   252   2e-67
AT1G22020.1 | Symbols: SHM6 | serine hydroxymethyltransferase 6 ...   223   1e-58
AT1G36370.1 | Symbols: SHM7 | serine hydroxymethyltransferase 7 ...   219   1e-57

>AT4G37930.1 | Symbols: SHM1, STM, SHMT1 | serine
           transhydroxymethyltransferase 1 | chr4:17831891-17834742
           REVERSE LENGTH=517
          Length = 517

 Score =  434 bits (1116), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/243 (84%), Positives = 227/243 (93%)

Query: 1   MLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQEVL 60
           MLADMAHISGLVAA VIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINK+G+EVL
Sbjct: 254 MLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVL 313

Query: 61  YDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSAFAQSLIEK 120
           YD+EDKINQAVFPGLQGGPHNHTITGLAVALKQA T E+K YQ+QVLSNS+ FAQ+L+E+
Sbjct: 314 YDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMER 373

Query: 121 GYELVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMIPGGIRMGT 180
           GYELVSGGT+NHLVLVNL+ KGIDGSRVEKVLE+VHIA+NKNTVPGDVSAM+PGGIRMGT
Sbjct: 374 GYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGT 433

Query: 181 PALTSRGFIEEDFRKVAEYFDAAVKIALQIKGNAKGTKLKDFVEAMQLDEEIQSKIAKVR 240
           PALTSRGF+EEDF KVAEYFD AV IAL++K  A+GTKLKDFV AM+    IQS+IAK+R
Sbjct: 434 PALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLR 493

Query: 241 HEV 243
           HEV
Sbjct: 494 HEV 496


>AT5G26780.1 | Symbols: SHM2 | serine hydroxymethyltransferase 2 |
           chr5:9418299-9421725 FORWARD LENGTH=517
          Length = 517

 Score =  429 bits (1102), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/243 (83%), Positives = 226/243 (93%)

Query: 1   MLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQEVL 60
           MLADMAHISGLVAAGVIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKG+KEINK+G+EV+
Sbjct: 254 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGLKEINKQGKEVM 313

Query: 61  YDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSAFAQSLIEK 120
           YDYED+INQAVFPGLQGGPHNHTITGLAVALKQA TPE+K YQ QVL N S FA++L+ K
Sbjct: 314 YDYEDRINQAVFPGLQGGPHNHTITGLAVALKQARTPEYKAYQDQVLRNCSKFAETLLAK 373

Query: 121 GYELVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMIPGGIRMGT 180
           GY+LVSGGT+NHLVLVNL+NKGIDGSRVEKVLE VHIAANKNTVPGDVSAM+PGGIRMGT
Sbjct: 374 GYDLVSGGTDNHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGT 433

Query: 181 PALTSRGFIEEDFRKVAEYFDAAVKIALQIKGNAKGTKLKDFVEAMQLDEEIQSKIAKVR 240
           PALTSRGFIEEDF KVAEYFD AVKIAL+IK  ++GTKLKDFV  MQ +E++QS+++K+R
Sbjct: 434 PALTSRGFIEEDFAKVAEYFDLAVKIALKIKAESQGTKLKDFVATMQSNEKLQSEMSKLR 493

Query: 241 HEV 243
             V
Sbjct: 494 EMV 496


>AT5G26780.2 | Symbols: SHM2 | serine hydroxymethyltransferase 2 |
           chr5:9418299-9421725 FORWARD LENGTH=533
          Length = 533

 Score =  420 bits (1079), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/259 (78%), Positives = 226/259 (87%), Gaps = 16/259 (6%)

Query: 1   MLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQEVL 60
           MLADMAHISGLVAAGVIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKG+KEINK+G+EV+
Sbjct: 254 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGLKEINKQGKEVM 313

Query: 61  YDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSAFA------ 114
           YDYED+INQAVFPGLQGGPHNHTITGLAVALKQA TPE+K YQ QVL N S FA      
Sbjct: 314 YDYEDRINQAVFPGLQGGPHNHTITGLAVALKQARTPEYKAYQDQVLRNCSKFAELDIRP 373

Query: 115 ----------QSLIEKGYELVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTV 164
                     Q+L+ KGY+LVSGGT+NHLVLVNL+NKGIDGSRVEKVLE VHIAANKNTV
Sbjct: 374 TVIISYGLSMQTLLAKGYDLVSGGTDNHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTV 433

Query: 165 PGDVSAMIPGGIRMGTPALTSRGFIEEDFRKVAEYFDAAVKIALQIKGNAKGTKLKDFVE 224
           PGDVSAM+PGGIRMGTPALTSRGFIEEDF KVAEYFD AVKIAL+IK  ++GTKLKDFV 
Sbjct: 434 PGDVSAMVPGGIRMGTPALTSRGFIEEDFAKVAEYFDLAVKIALKIKAESQGTKLKDFVA 493

Query: 225 AMQLDEEIQSKIAKVRHEV 243
            MQ +E++QS+++K+R  V
Sbjct: 494 TMQSNEKLQSEMSKLREMV 512


>AT5G26780.3 | Symbols: SHM2 | serine hydroxymethyltransferase 2 |
           chr5:9418299-9421725 FORWARD LENGTH=533
          Length = 533

 Score =  420 bits (1079), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/259 (78%), Positives = 226/259 (87%), Gaps = 16/259 (6%)

Query: 1   MLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQEVL 60
           MLADMAHISGLVAAGVIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKG+KEINK+G+EV+
Sbjct: 254 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGLKEINKQGKEVM 313

Query: 61  YDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSAFA------ 114
           YDYED+INQAVFPGLQGGPHNHTITGLAVALKQA TPE+K YQ QVL N S FA      
Sbjct: 314 YDYEDRINQAVFPGLQGGPHNHTITGLAVALKQARTPEYKAYQDQVLRNCSKFAELDIRP 373

Query: 115 ----------QSLIEKGYELVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTV 164
                     Q+L+ KGY+LVSGGT+NHLVLVNL+NKGIDGSRVEKVLE VHIAANKNTV
Sbjct: 374 TVIISYGLSMQTLLAKGYDLVSGGTDNHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTV 433

Query: 165 PGDVSAMIPGGIRMGTPALTSRGFIEEDFRKVAEYFDAAVKIALQIKGNAKGTKLKDFVE 224
           PGDVSAM+PGGIRMGTPALTSRGFIEEDF KVAEYFD AVKIAL+IK  ++GTKLKDFV 
Sbjct: 434 PGDVSAMVPGGIRMGTPALTSRGFIEEDFAKVAEYFDLAVKIALKIKAESQGTKLKDFVA 493

Query: 225 AMQLDEEIQSKIAKVRHEV 243
            MQ +E++QS+++K+R  V
Sbjct: 494 TMQSNEKLQSEMSKLREMV 512


>AT4G32520.2 | Symbols: SHM3 | serine hydroxymethyltransferase 3 |
           chr4:15689642-15692334 REVERSE LENGTH=529
          Length = 529

 Score =  279 bits (714), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 134/222 (60%), Positives = 168/222 (75%), Gaps = 8/222 (3%)

Query: 1   MLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQEVL 60
           ++ DMAHISGLVAA V+  PF+Y D+VTTTTHKSLRGPRG MIFFRK    IN       
Sbjct: 282 LMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGGMIFFRK--DPING------ 333

Query: 61  YDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSAFAQSLIEK 120
            D E  +N AVFPGLQGGPHNHTI GLAV LK A +PEFK YQK+V+SN  A A  L+E 
Sbjct: 334 VDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKAYQKRVVSNCRALANRLVEL 393

Query: 121 GYELVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMIPGGIRMGT 180
           G++LVSGG++NHLVLV+LR  G+DG+RVEK+L+   I  NKN+VPGD SA++PGGIR+G+
Sbjct: 394 GFKLVSGGSDNHLVLVDLRPMGMDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 453

Query: 181 PALTSRGFIEEDFRKVAEYFDAAVKIALQIKGNAKGTKLKDF 222
           PA+T+RG  E+DF  VA++    V+I ++ K  A G+KL+DF
Sbjct: 454 PAMTTRGLSEKDFVVVADFIKEGVEITMEAKKAAPGSKLQDF 495


>AT4G32520.1 | Symbols: SHM3, AtSHMT3 | serine
           hydroxymethyltransferase 3 | chr4:15689642-15692334
           REVERSE LENGTH=529
          Length = 529

 Score =  279 bits (714), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 134/222 (60%), Positives = 168/222 (75%), Gaps = 8/222 (3%)

Query: 1   MLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQEVL 60
           ++ DMAHISGLVAA V+  PF+Y D+VTTTTHKSLRGPRG MIFFRK    IN       
Sbjct: 282 LMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGGMIFFRK--DPING------ 333

Query: 61  YDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSAFAQSLIEK 120
            D E  +N AVFPGLQGGPHNHTI GLAV LK A +PEFK YQK+V+SN  A A  L+E 
Sbjct: 334 VDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKAYQKRVVSNCRALANRLVEL 393

Query: 121 GYELVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMIPGGIRMGT 180
           G++LVSGG++NHLVLV+LR  G+DG+RVEK+L+   I  NKN+VPGD SA++PGGIR+G+
Sbjct: 394 GFKLVSGGSDNHLVLVDLRPMGMDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 453

Query: 181 PALTSRGFIEEDFRKVAEYFDAAVKIALQIKGNAKGTKLKDF 222
           PA+T+RG  E+DF  VA++    V+I ++ K  A G+KL+DF
Sbjct: 454 PAMTTRGLSEKDFVVVADFIKEGVEITMEAKKAAPGSKLQDF 495


>AT4G13930.1 | Symbols: SHM4 | serine hydroxymethyltransferase 4 |
           chr4:8048013-8050021 REVERSE LENGTH=471
          Length = 471

 Score =  261 bits (668), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 134/241 (55%), Positives = 169/241 (70%), Gaps = 4/241 (1%)

Query: 1   MLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQE-- 58
           +L DMAHISGLVAA    +PF+Y DVVTTTTHKSLRGPR  MIF+RKG K   KKGQ   
Sbjct: 212 LLCDMAHISGLVAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFYRKGPKP-PKKGQPEG 270

Query: 59  VLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSAFAQSLI 118
            +YD+EDKIN AVFP LQGGPHNH I  LAVALKQA TP FK Y KQV +N+ A    L+
Sbjct: 271 AVYDFEDKINFAVFPALQGGPHNHQIGALAVALKQANTPGFKVYAKQVKANAVALGNYLM 330

Query: 119 EKGYELVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMIPGGIRM 178
            KGY++V+ GTENHLVL +LR  G+ G++VEK+ +   I  NKN V GD SA+ PGG+R+
Sbjct: 331 SKGYQIVTNGTENHLVLWDLRPLGLTGNKVEKLCDLCSITLNKNAVFGDSSALAPGGVRI 390

Query: 179 GTPALTSRGFIEEDFRKVAEYFDAAVKIALQIKGNAKGTKLKDFVEAMQLDEEIQSKIAK 238
           G PA+TSRG +E+DF ++ E+   AV + L I+    G  LKDF + +  ++++    A 
Sbjct: 391 GAPAMTSRGLVEKDFEQIGEFLSRAVTLTLDIQ-KTYGKLLKDFNKGLVNNKDLDQLKAD 449

Query: 239 V 239
           V
Sbjct: 450 V 450


>AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate
           (PLP)-dependent transferases superfamily protein |
           chr4:8032146-8033718 REVERSE LENGTH=470
          Length = 470

 Score =  252 bits (643), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 130/241 (53%), Positives = 164/241 (68%), Gaps = 4/241 (1%)

Query: 1   MLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQEV- 59
           +L DMAH S LVAA     PF+Y DVVTT+THKSLRGPR  MIF+RKG K   KKGQ   
Sbjct: 212 LLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRAGMIFYRKGPKPA-KKGQPEG 270

Query: 60  -LYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSAFAQSLI 118
            +YD++ KIN AVFP LQ GPHN+ I  LAVALKQ M P FK Y KQV +N++  A  LI
Sbjct: 271 EVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAPSFKVYAKQVKANAACLASYLI 330

Query: 119 EKGYELVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMIPGGIRM 178
            KGY LV+ GT+NHL+L +LR  G+ G++VEKV E  +I  N+N V GD S + PGG+R+
Sbjct: 331 NKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRI 390

Query: 179 GTPALTSRGFIEEDFRKVAEYFDAAVKIALQIKGNAKGTKLKDFVEAMQLDEEIQSKIAK 238
           GTPA+TSRG +E+DF K+ E+   AV I L I+    G  +KDF + +  ++EI    A 
Sbjct: 391 GTPAMTSRGLVEKDFEKIGEFLHRAVTITLDIQ-EQYGKVMKDFNKGLVNNKEIDEIKAD 449

Query: 239 V 239
           V
Sbjct: 450 V 450


>AT1G22020.1 | Symbols: SHM6 | serine hydroxymethyltransferase 6 |
           chr1:7754599-7757087 FORWARD LENGTH=599
          Length = 599

 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 105/213 (49%), Positives = 148/213 (69%), Gaps = 6/213 (2%)

Query: 1   MLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVK------EINK 54
           ++ DMA ISGLVAA   P+PFDY D+VT+TTHKSLRGPRG +IF+++G+K       +N 
Sbjct: 342 LMFDMAQISGLVAAKESPNPFDYCDIVTSTTHKSLRGPRGGIIFYKRGLKPKKQSINLNH 401

Query: 55  KGQEVLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSAFA 114
               + YD+E+KIN +VFP LQGGPHN+ I  LA+ALKQA +PE+K Y +QV  N+ A A
Sbjct: 402 CESNIQYDFEEKINFSVFPSLQGGPHNNHIAALAIALKQAASPEYKLYMRQVKKNAKALA 461

Query: 115 QSLIEKGYELVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMIPG 174
            +LI +  +L++GGT+NHL+L +L   G+ G   EKV E  HI  NK  +  +   + PG
Sbjct: 462 SALISRKCKLITGGTDNHLLLWDLTPLGLTGKVYEKVCEMCHITVNKVAIFSENGVISPG 521

Query: 175 GIRMGTPALTSRGFIEEDFRKVAEYFDAAVKIA 207
           G+R+G+PA+TSRG +E +F  +A++   A +IA
Sbjct: 522 GVRIGSPAMTSRGCLEPEFETMADFLYRAAQIA 554


>AT1G36370.1 | Symbols: SHM7 | serine hydroxymethyltransferase 7 |
           chr1:13696240-13698576 REVERSE LENGTH=598
          Length = 598

 Score =  219 bits (558), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/250 (46%), Positives = 163/250 (65%), Gaps = 13/250 (5%)

Query: 1   MLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQE-- 58
           ++ DMAHISGLVA     +PFD+ D+VT+TTHK LRGPRG +IF+R+G K I K+G    
Sbjct: 338 LMCDMAHISGLVATKECSNPFDHCDIVTSTTHKGLRGPRGGIIFYRRGPK-IRKQGHHSS 396

Query: 59  -----VLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSAF 113
                  YD E+KIN AVFP LQGGPHN+ I  LA+ALKQ  TPE+K Y +Q+  N+ A 
Sbjct: 397 HCDTSTHYDLEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYIQQMKKNAQAL 456

Query: 114 AQSLIEKGYELVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMIP 173
           A +L+ +   LV+GGT+NHL+L +L   G+ G   EKV E  HI  NK  + GD   + P
Sbjct: 457 AAALLRRKCRLVTGGTDNHLLLWDLTPMGLTGKVYEKVCEMCHITLNKTAIFGDNGTISP 516

Query: 174 GGIRMGTPALTSRGFIEEDFRKVAEYFDAAVKIALQIKGNAKGTKLKDFVEAMQLDEEIQ 233
           GG+R+GTPA+T+RG IE DF  +A++   A +I   ++    G   K+FV+++  +++  
Sbjct: 517 GGVRIGTPAMTTRGCIESDFETMADFLIKAAQITSALQ-REHGKSHKEFVKSLCTNKD-- 573

Query: 234 SKIAKVRHEV 243
             IA++R+ V
Sbjct: 574 --IAELRNRV 581