Miyakogusa Predicted Gene

Lj1g3v0173650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0173650.1 tr|G7JPZ6|G7JPZ6_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_4g123430 PE=4 SV=1,41.01,4e-19,seg,NULL; FBOX,F-box
domain, cyclin-like,56836_g.1
         (179 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74875.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    68   3e-12
AT1G67623.1 | Symbols:  | F-box family protein | chr1:25342111-2...    65   4e-11
AT2G35280.1 | Symbols:  | F-box family protein | chr2:14859709-1...    53   1e-07

>AT1G74875.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: F-box family protein
           (TAIR:AT1G67623.1); Has 36 Blast hits to 36 proteins in
           8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:28128470-28129745 REVERSE
           LENGTH=243
          Length = 243

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 3/109 (2%)

Query: 73  VEVVATVASHSFVDLHAIKICCKDFLDATEDSYVWRKVSLDTFPLIQWYTNDKTSSFLNR 132
           + +V  V S S  +   +++  K F   + D Y+ +++SL+  PL+ W    K  +F  R
Sbjct: 21  IHLVINVLSSSLSEFRNLQLVSKSFKRISNDRYILQRLSLNKIPLLPWRNRKKFHNFFKR 80

Query: 133 CREYGNIDSLYREGLRKIF---DYQNGKIDGHEILEVAAQNGHKEAKYV 178
           CR+ GN++++YR+GL   F    ++  +  G + +   A NG++EA+YV
Sbjct: 81  CRKSGNLEAIYRKGLVDYFHRDSHERQRDRGLKHIAKTANNGNQEAQYV 129


>AT1G67623.1 | Symbols:  | F-box family protein |
           chr1:25342111-25343243 FORWARD LENGTH=296
          Length = 296

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 7/117 (5%)

Query: 64  IKTLPQDLLVEVVATVASHSFVDLHAIKICCKDFLDATEDSYVWRKVSLDTFPLIQWYTN 123
           + +LP+DLLVE+ +   + S   +  +++  K F    ++ YV+ ++SL     + W+ N
Sbjct: 24  LDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHEN 83

Query: 124 DKTSSFLNRCREYGNIDSLYREGLRKIFDYQNGKID--GHEILEVAAQNGHKEAKYV 178
             ++ F+ RC E  N ++L+++G     +Y   K+   G E L  AA+ G KEAKYV
Sbjct: 84  --SAKFIERCTESRNPEALFQKGF---INYFRDKLQDRGLEYLAEAAEKGIKEAKYV 135


>AT2G35280.1 | Symbols:  | F-box family protein |
           chr2:14859709-14860200 REVERSE LENGTH=163
          Length = 163

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%)

Query: 62  SSIKTLPQDLLVEVVATVASHSFVDLHAIKICCKDFLDATEDSYVWRKVSLDTF---PLI 118
           S ++ LPQDLL E+VA +   S  D H   + CK+   +  D  V + ++L      PL 
Sbjct: 9   SRLEALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNLALLVKKPL- 67

Query: 119 QWYTNDKTSSFLNRCREYGNIDSLYREGLRKIFDYQNGKIDGHEILEVAAQNGHKEAKYV 178
              +  K    + +C    N D+ Y +G+   F+  +  +D H I  +AA  G KEA Y+
Sbjct: 68  ---SCRKHLLIMKKCLANNNPDAHYIKGIIWYFNLDHCDVDLHHI-GIAANGGQKEAIYM 123