Miyakogusa Predicted Gene

Lj1g3v0130100.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0130100.1 Non Chatacterized Hit- tr|K0SJM3|K0SJM3_THAOC
Uncharacterized protein (Fragment) OS=Thalassiosira
oc,29.9,0.0000001,seg,NULL,CUFF.25267.1
         (389 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16810.1 | Symbols:  | Protein kinase superfamily protein | c...   421   e-118

>AT5G16810.1 | Symbols:  | Protein kinase superfamily protein |
           chr5:5526860-5529878 REVERSE LENGTH=418
          Length = 418

 Score =  421 bits (1081), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/360 (61%), Positives = 265/360 (73%), Gaps = 9/360 (2%)

Query: 34  RLLRPNATLISDSNSFQVGKPIGSYGFMNVTTVFXXXXXXXXXXXXDFKG-LKTQDVEEG 92
           RL    A+LI+ ++SF+VG+ IGSYGFMNVT+              D  G LK+QD+ EG
Sbjct: 45  RLHAVTASLITSADSFEVGRLIGSYGFMNVTSYTGLQSGSDFEYTSDDIGRLKSQDIGEG 104

Query: 93  SVKIRLYEGRVSQGPLRGTPVVFKVYPXXXXXXXXXXXXXXNELNSHVFLQSSSKGISEH 152
           +VKIRLY+GR+SQGP RGTPVVFKVYP              NELN+H FLQS  K +  +
Sbjct: 105 AVKIRLYQGRISQGPFRGTPVVFKVYPGQRAGGVEADMMAANELNAHSFLQS--KSLPAN 162

Query: 153 LMXXXXXXXXXXXXXXXAFRDVGRYTAADYAKFASEKVSRDRASGEPSSWNRYERVQTIK 212
           L+               AFRD G+ +AADYA+ ASEK +R R+ G    WN YE+ Q IK
Sbjct: 163 LLLLVGGFETQLGEQWLAFRDGGKDSAADYAQTASEKTTRARSQG---VWNPYEKEQMIK 219

Query: 213 RRQFFIIKLLHGAMRGLAYMHDHERLHQSLGPFSVALNTISEREARYLIPRLRDLAFSVD 272
           RR+ F+IK+L GAM+GLA+MHD++RLHQSLGP S+ LNT +EREA YLIPRLRDLAFSVD
Sbjct: 220 RRRNFVIKILQGAMKGLAFMHDNDRLHQSLGPSSIVLNTPAEREAIYLIPRLRDLAFSVD 279

Query: 273 IRYSELE---NSGSLADGLWARASRAGAFTYLEKRAFGIADDIYEAGLLFAYLAFVPFCE 329
           IR S LE    SGSL++ LW RA+ AGA+T  EKRAFGIADDIYEAGLLFAYLAFVPFCE
Sbjct: 280 IRPSCLEEGATSGSLSEQLWRRANAAGAYTVFEKRAFGIADDIYEAGLLFAYLAFVPFCE 339

Query: 330 AGVTDGLSLQRLLENTFQLDLEATREYCIADDRLVDGVEFLDLGNGAGWEIIQAMLNADF 389
           AGVTD LSLQRLLENTF+LD+EA REYC+AD+RL + V+FLDLG+ AGWE++QAMLNAD+
Sbjct: 340 AGVTDSLSLQRLLENTFRLDIEAVREYCLADERLEEAVKFLDLGDRAGWELLQAMLNADY 399