Miyakogusa Predicted Gene

Lj1g3v0129720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0129720.1 tr|Q0ZCE0|Q0ZCE0_POPTR Poly(ADP-ribose)
glycohydrolase OS=Populus trichocarpa PE=2
SV=1,36.09,1e-17,POLY(ADP-RIBOSE) GLYCOHYDROLASE,Poly(ADP-ribose)
glycohydrolase; PARG_cat,Poly(ADP-ribose)
glycohydr,NODE_83911_length_764_cov_33.859947.path1.1
         (184 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31870.1 | Symbols: TEJ | Poly (ADP-ribose) glycohydrolase (P...   175   2e-44
AT2G31870.2 | Symbols: TEJ | Poly (ADP-ribose) glycohydrolase (P...   175   2e-44
AT2G31865.1 | Symbols: PARG2 | poly(ADP-ribose) glycohydrolase 2...   135   1e-32
AT2G31865.2 | Symbols: PARG2 | poly(ADP-ribose) glycohydrolase 2...   133   7e-32

>AT2G31870.1 | Symbols: TEJ | Poly (ADP-ribose) glycohydrolase
           (PARG) | chr2:13549999-13553756 REVERSE LENGTH=548
          Length = 548

 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 116/189 (61%), Gaps = 17/189 (8%)

Query: 1   MRQYRPEFLLREINKAFCGFLYGSKHQLYQKIL--------------QEKGCPSTLFDAA 46
           MR ++   LLREINKA CGFL  SK   +Q I               ++ G   T   A+
Sbjct: 350 MRHFKDICLLREINKALCGFLNCSKAWEHQNIFMDEGDNEIQLVRNGRDSGLLRTETTAS 409

Query: 47  TSTPM---ETSEGKCSNHEIRDSQNDYHRMEQCNNIGVATGNWGCGAFGGDPEVKTIIQW 103
             TP+   E +  K +N+ IRD   +    E   + GVATGNWGCG FGGDPE+K  IQW
Sbjct: 410 HRTPLNDVEMNREKPANNLIRDFYVEGVDNEDHEDDGVATGNWGCGVFGGDPELKATIQW 469

Query: 104 LAASQALRPFIAYYRFRLEALHNIDKVAHWILSHRWTVGDLWNMLTEYSMNRSKGGTNVG 163
           LAASQ  RPFI+YY F +EAL N+D+V  WILSH+WTVGDLWNM+ EYS  R    T+VG
Sbjct: 470 LAASQTRRPFISYYTFGVEALRNLDQVTKWILSHKWTVGDLWNMMLEYSAQRLYKQTSVG 529

Query: 164 FLQWVLPSM 172
           F  W+LPS+
Sbjct: 530 FFSWLLPSL 538


>AT2G31870.2 | Symbols: TEJ | Poly (ADP-ribose) glycohydrolase
           (PARG) | chr2:13549999-13553756 REVERSE LENGTH=547
          Length = 547

 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/188 (50%), Positives = 117/188 (62%), Gaps = 16/188 (8%)

Query: 1   MRQYRPEFLLREINKAFCGFLYGSKHQLYQKILQEKGC----------PSTLFDAATS-- 48
           MR ++   LLREINKA CGFL  SK   +Q I  ++G            S L    T+  
Sbjct: 350 MRHFKDICLLREINKALCGFLNCSKAWEHQNIFMDEGDNEIQLVRNGRDSGLLRTETTSH 409

Query: 49  -TPM---ETSEGKCSNHEIRDSQNDYHRMEQCNNIGVATGNWGCGAFGGDPEVKTIIQWL 104
            TP+   E +  K +N+ IRD   +    E   + GVATGNWGCG FGGDPE+K  IQWL
Sbjct: 410 RTPLNDVEMNREKPANNLIRDFYVEGVDNEDHEDDGVATGNWGCGVFGGDPELKATIQWL 469

Query: 105 AASQALRPFIAYYRFRLEALHNIDKVAHWILSHRWTVGDLWNMLTEYSMNRSKGGTNVGF 164
           AASQ  RPFI+YY F +EAL N+D+V  WILSH+WTVGDLWNM+ EYS  R    T+VGF
Sbjct: 470 AASQTRRPFISYYTFGVEALRNLDQVTKWILSHKWTVGDLWNMMLEYSAQRLYKQTSVGF 529

Query: 165 LQWVLPSM 172
             W+LPS+
Sbjct: 530 FSWLLPSL 537


>AT2G31865.1 | Symbols: PARG2 | poly(ADP-ribose) glycohydrolase 2 |
           chr2:13546790-13549472 REVERSE LENGTH=522
          Length = 522

 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 101/173 (58%), Gaps = 14/173 (8%)

Query: 1   MRQYRPEFLLREINKAFCGFLYGSKHQLYQKILQEKGCPST-LFDAATSTPMETSEGKCS 59
           M QY+ + L+RE+NKAF G+++  K+ +  K   E       L   + S  +E+S   C 
Sbjct: 361 MGQYKLDALIREVNKAFSGYMHQCKYNIDVKHDPEASSSHVPLTSDSASQVIESSHRWCI 420

Query: 60  NHEIRDSQNDYHRMEQCNNIGVATGNWGCGAFGGDPEVKTIIQWLAASQALRPFIAYYRF 119
           +HE +              IGVATGNWGCG FGGDPE+K ++QWLA SQ+ RPF++YY F
Sbjct: 421 DHEEK-------------KIGVATGNWGCGVFGGDPELKIMLQWLAISQSGRPFMSYYTF 467

Query: 120 RLEALHNIDKVAHWILSHRWTVGDLWNMLTEYSMNRSKGGTNVGFLQWVLPSM 172
            L+AL N+++V   +     TVGDLW  L EYS  R    T +GF  W++ S+
Sbjct: 468 GLQALQNLNQVIEMVALQEMTVGDLWKKLVEYSSERLSRRTWLGFFSWLMTSL 520


>AT2G31865.2 | Symbols: PARG2 | poly(ADP-ribose) glycohydrolase 2 |
           chr2:13546790-13549472 REVERSE LENGTH=532
          Length = 532

 Score =  133 bits (334), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 28/185 (15%)

Query: 1   MRQYRPEFLLREINKAFCGFLYGSKHQLYQK-------------ILQEKGCPSTLFDAAT 47
           M QY+ + L+RE+NKAF G+++  K+ +  K             +  ++  P T    + 
Sbjct: 361 MGQYKLDALIREVNKAFSGYMHQCKYNIDVKHDPEASSSTKIKFVFAKQHVPLT--SDSA 418

Query: 48  STPMETSEGKCSNHEIRDSQNDYHRMEQCNNIGVATGNWGCGAFGGDPEVKTIIQWLAAS 107
           S  +E+S   C +HE +              IGVATGNWGCG FGGDPE+K ++QWLA S
Sbjct: 419 SQVIESSHRWCIDHEEK-------------KIGVATGNWGCGVFGGDPELKIMLQWLAIS 465

Query: 108 QALRPFIAYYRFRLEALHNIDKVAHWILSHRWTVGDLWNMLTEYSMNRSKGGTNVGFLQW 167
           Q+ RPF++YY F L+AL N+++V   +     TVGDLW  L EYS  R    T +GF  W
Sbjct: 466 QSGRPFMSYYTFGLQALQNLNQVIEMVALQEMTVGDLWKKLVEYSSERLSRRTWLGFFSW 525

Query: 168 VLPSM 172
           ++ S+
Sbjct: 526 LMTSL 530