Miyakogusa Predicted Gene

Lj1g3v0128850.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0128850.1 Non Chatacterized Hit- tr|C3Y9F2|C3Y9F2_BRAFL
Putative uncharacterized protein OS=Branchiostoma
flor,26.79,0.000000000000008,NERD,NERD,CUFF.25261.1
         (329 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65020.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   412   e-115

>AT1G65020.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23
           plant structures; EXPRESSED DURING: 13 growth stages;
           CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528);
           Has 69 Blast hits to 69 proteins in 27 species: Archae -
           0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36;
           Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
           | chr1:24154523-24156511 REVERSE LENGTH=319
          Length = 319

 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/311 (66%), Positives = 241/311 (77%), Gaps = 3/311 (0%)

Query: 8   MWAAIICGLVIYKLFRRFMYDDDILDIEGSDSSALFSVADRLKKLYGGKVHVGLRIPDAD 67
           MW  IICGLVIYKL RRF YDD+  D+E SDS+ALFSVA RL+KLYGGK +VGLRIPDAD
Sbjct: 1   MWIEIICGLVIYKLVRRFFYDDEFSDVETSDSTALFSVAHRLEKLYGGKAYVGLRIPDAD 60

Query: 68  SASRQTIDIVLVTKQELAVISVKNFSGILAVHRDGSWVSEKPGKHKQETHPDPVEEARKQ 127
           +ASRQ ID+VLVTK ++ VISVKN SGI+ V  DGSWV E    H  ET PDP+ E +KQ
Sbjct: 61  TASRQDIDVVLVTKGDVVVISVKNLSGIVTVTSDGSWVCEGGKHHTTETFPDPLAEVKKQ 120

Query: 128 VSILESYLKQRGVDLPKGYISYKVILPNPKLCTLPASDFPPEVITHEQWVQLKPGHKSMF 187
            S+LESYL+QRGV L +G +S KV++PNP   T+ A  FP EVIT+E W QLKP  KS  
Sbjct: 121 ASVLESYLEQRGVTLLEGNVSCKVVIPNPSFRTIHA--FPSEVITYEDWQQLKPVSKSKI 178

Query: 188 SSWVKSAFGAGKKDMQESTQNLDFVLSTAPIWDRLELKGSKYVLGEFLEFKGKQEDIEAL 247
           S WVK AF  GK+  + S Q L+F+L TAP WDR+ELK SK VLGEFLEFKGKQED  AL
Sbjct: 179 SGWVKGAFSTGKEMQESSHQKLNFILGTAPTWDRVELKSSKIVLGEFLEFKGKQEDTLAL 238

Query: 248 SYIRRSKVGRVTIQKTSMFGLAPSRLQVLYSLRDYRTEGSSTPPELNEVNVRSSTEIVFQ 307
             I+RSKV RV+IQKTSMFGLAPSRLQVLYS RDYR+EGSS   E  EV VRSSTE++FQ
Sbjct: 239 RNIKRSKVDRVSIQKTSMFGLAPSRLQVLYSYRDYRSEGSS-GAESKEVTVRSSTEVLFQ 297

Query: 308 PENASKVRKFK 318
           P +++K++KFK
Sbjct: 298 PRDSTKMKKFK 308