Miyakogusa Predicted Gene
- Lj1g3v0118830.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0118830.2 Non Chatacterized Hit- tr|G3P8B8|G3P8B8_GASAC
Uncharacterized protein OS=Gasterosteus aculeatus GN=R,29.66,6e-18,RNA
recognition motif,RNA recognition motif domain; Zinc finger
domain,Zinc finger, RanBP2-type; RRM,CUFF.25259.2
(616 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G54230.2 | Symbols: SUA | suppressor of abi3-5 | chr3:2007387... 515 e-146
AT3G54230.1 | Symbols: SUA | suppressor of abi3-5 | chr3:2007387... 509 e-144
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 59 7e-09
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 59 1e-08
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 4e-07
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 53 5e-07
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 53 5e-07
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 52 1e-06
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 51 2e-06
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 51 2e-06
>AT3G54230.2 | Symbols: SUA | suppressor of abi3-5 |
chr3:20073872-20080142 FORWARD LENGTH=1008
Length = 1008
Score = 515 bits (1327), Expect = e-146, Method: Compositional matrix adjust.
Identities = 305/650 (46%), Positives = 373/650 (57%), Gaps = 96/650 (14%)
Query: 1 MEPGRYALHQGWDNNSALEGYGAVHEPNFRVGDSYDERRFIDERYQRDAIYQRNTFPRDG 60
M+P RY Q WDNNSA EGYG H+PN R G SYD+ + DER RD +Y
Sbjct: 1 MDPSRYGRQQEWDNNSAPEGYGTQHDPNHRFGVSYDDG-YPDERLMRDDVYN-------- 51
Query: 61 LDREAYLPPG-PAVGHWSQSKRRGYDEDYPLERQSRRLQRPYHESYNQID--RDREIGMY 117
PPG +G QS++R Y+E+YP E RR ++PY +S D D E G
Sbjct: 52 ------YPPGHNTLGDLPQSRKRNYEENYPSEL--RRQEKPYIDSNYAADYYHDSEAGSR 103
Query: 118 QEYDKFQDDYTSIENYADRGYDKPARFXXXXXXXXXXXXXXXKSRVSHHRREDSHERDYD 177
+ Y D +++ +R+ +S+ HH R+D E+DYD
Sbjct: 104 NGH------------YRDHEHERSSRYDGCDDYSCNDNNY--RSKNYHHSRDDGREKDYD 149
Query: 178 HGRHSYDSDYDRG-----------------NRRDSNWRQRESRERDTKGLSRERDLSPHR 220
+ R SYDS+Y+R N RD W R+ RE D + SRERD SPH+
Sbjct: 150 YTRRSYDSEYERASVRDGSRKSRDPQDRERNSRDREWDSRD-REWDKRCYSRERDESPHK 208
Query: 221 KHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYDDXXXXXXXXXXXXXXXYRED 280
++E G + YRED
Sbjct: 209 RYEKSRSRST---------------------------GRGEFSRSRSPRGRSHGRSYRED 241
Query: 281 SYVDSQYXXXXXXXXXXXXXXXXHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHV 340
SY + H+S PSATVVVKGLS K+TEEDLYQILAEWGPL HV
Sbjct: 242 SYEGDHWNESERRREYEDRHNQDHFSATPSATVVVKGLSMKSTEEDLYQILAEWGPLHHV 301
Query: 341 RVIKERNSGLSRGFAFIDFPSVGAAQGMMDKLGDEGLVVDGRKLFFEYSSKPTGGAGPD- 399
RVI+E+NSG+SRGFAFIDFP+V AA+ MMD++ +G+V+DGRKL F YSS+PTG AG
Sbjct: 302 RVIREQNSGISRGFAFIDFPTVDAARTMMDRIEHDGIVLDGRKLMFHYSSQPTGRAGVSR 361
Query: 400 ----GAMKPGHSHKSITVPSDWMCTICSYINFARRTSCYQCNEPRTDDAPAADISSSNSA 455
+ + +++ VP+DW+CTIC INFARRTSC+QCNEP+T D+P+AD+ SNSA
Sbjct: 362 RQEHASRRSYGGSRNMIVPTDWICTICGCINFARRTSCFQCNEPKTKDSPSADVGLSNSA 421
Query: 456 ALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHSPIKDLRLVRDKFTHVSRGFAFVH 515
A GK+ E GPTHVLVVRGLDE+ADEEMLRYEFSKH+PIKDLRLVRDKFTHVSRGFAFVH
Sbjct: 422 A-GKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVH 480
Query: 516 FYSVEDATKALEATNGTTLEKNGQILRVAYAKSILXXXXXXXXXXXXXXXXXXXXXXXTF 575
FYSVEDATKALEATN T LE+NG+ILRVAYAKS+ TF
Sbjct: 481 FYSVEDATKALEATNRTALERNGKILRVAYAKSVHGSGTGISAPSHSNNLAAAAIEAATF 540
Query: 576 AQQYDSVGWAPKEYNADDKQCTA---------PAQTGTEVGAPQSGFVWD 616
+QQYD VGWAPKEYN +KQ T +Q GT APQSG+VWD
Sbjct: 541 SQQYDGVGWAPKEYNTGEKQNTGGQAQGVGEIESQKGTS--APQSGYVWD 588
>AT3G54230.1 | Symbols: SUA | suppressor of abi3-5 |
chr3:20073872-20080142 FORWARD LENGTH=1007
Length = 1007
Score = 509 bits (1312), Expect = e-144, Method: Compositional matrix adjust.
Identities = 304/650 (46%), Positives = 372/650 (57%), Gaps = 97/650 (14%)
Query: 1 MEPGRYALHQGWDNNSALEGYGAVHEPNFRVGDSYDERRFIDERYQRDAIYQRNTFPRDG 60
M+P RY Q WDNNSA EGYG H+PN R G SYD+ + DER RD +Y
Sbjct: 1 MDPSRYGRQQEWDNNSAPEGYGTQHDPNHRFGVSYDDG-YPDERLMRDDVYN-------- 51
Query: 61 LDREAYLPPG-PAVGHWSQSKRRGYDEDYPLERQSRRLQRPYHESYNQID--RDREIGMY 117
PPG +G QS++R Y+E+YP E RR ++PY +S D D E G
Sbjct: 52 ------YPPGHNTLGDLPQSRKRNYEENYPSEL--RRQEKPYIDSNYAADYYHDSEAGSR 103
Query: 118 QEYDKFQDDYTSIENYADRGYDKPARFXXXXXXXXXXXXXXXKSRVSHHRREDSHERDYD 177
+ Y D +++ +R+ +S+ HH R+D E+DYD
Sbjct: 104 NGH------------YRDHEHERSSRYDGCDDYSCNDNNY--RSKNYHHSRDDGREKDYD 149
Query: 178 HGRHSYDSDYDRG-----------------NRRDSNWRQRESRERDTKGLSRERDLSPHR 220
+ R SYDS+Y+R N RD W R+ RE D + SRERD SPH+
Sbjct: 150 YTRRSYDSEYERASVRDGSRKSRDPQDRERNSRDREWDSRD-REWDKRCYSRERDESPHK 208
Query: 221 KHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYDDXXXXXXXXXXXXXXXYRED 280
++E G + YRED
Sbjct: 209 RYEKSRSRST---------------------------GRGEFSRSRSPRGRSHGRSYRED 241
Query: 281 SYVDSQYXXXXXXXXXXXXXXXXHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHV 340
SY + H+S PSATVVVKGLS K+TEEDLYQILAEWGPL HV
Sbjct: 242 SYEGDHWNESERRREYEDRHNQDHFSATPSATVVVKGLSMKSTEEDLYQILAEWGPLHHV 301
Query: 341 RVIKERNSGLSRGFAFIDFPSVGAAQGMMDKLGDEGLVVDGRKLFFEYSSKPTGGAGPD- 399
RVI+E+NSG+SRGFAFIDFP+V AA+ MMD++ +G+V+DGRKL F YS +PTG AG
Sbjct: 302 RVIREQNSGISRGFAFIDFPTVDAARTMMDRIEHDGIVLDGRKLMFHYS-QPTGRAGVSR 360
Query: 400 ----GAMKPGHSHKSITVPSDWMCTICSYINFARRTSCYQCNEPRTDDAPAADISSSNSA 455
+ + +++ VP+DW+CTIC INFARRTSC+QCNEP+T D+P+AD+ SNSA
Sbjct: 361 RQEHASRRSYGGSRNMIVPTDWICTICGCINFARRTSCFQCNEPKTKDSPSADVGLSNSA 420
Query: 456 ALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHSPIKDLRLVRDKFTHVSRGFAFVH 515
A GK+ E GPTHVLVVRGLDE+ADEEMLRYEFSKH+PIKDLRLVRDKFTHVSRGFAFVH
Sbjct: 421 A-GKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVH 479
Query: 516 FYSVEDATKALEATNGTTLEKNGQILRVAYAKSILXXXXXXXXXXXXXXXXXXXXXXXTF 575
FYSVEDATKALEATN T LE+NG+ILRVAYAKS+ TF
Sbjct: 480 FYSVEDATKALEATNRTALERNGKILRVAYAKSVHGSGTGISAPSHSNNLAAAAIEAATF 539
Query: 576 AQQYDSVGWAPKEYNADDKQCTA---------PAQTGTEVGAPQSGFVWD 616
+QQYD VGWAPKEYN +KQ T +Q GT APQSG+VWD
Sbjct: 540 SQQYDGVGWAPKEYNTGEKQNTGGQAQGVGEIESQKGTS--APQSGYVWD 587
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 110/251 (43%), Gaps = 37/251 (14%)
Query: 310 SATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGLSRGFAFIDFPSVGAAQGMM 369
+A++ V L TE LY AE+ L VR+ K+ +SG S + + +F S A +
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 370 DKLGDEGLVVDGRKLFFEYSSKPTGGAGPDGAMKPGHSHKSI-TVPSDWMCTICS--YIN 426
+K + +++G+ + +S + PD A + G + + +P + +
Sbjct: 83 EKKNNS--LLNGKMIRVMWSVR-----APD-ARRNGVGNVFVKNLPESVTNAVLQDMFKK 134
Query: 427 FARRTSC------------YQCNEPRTDDAPAADISSSNSAALGKKGLEAGPTHV----- 469
F SC Y + +DA A I + NS + K + G
Sbjct: 135 FGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRV 194
Query: 470 --------LVVRGLDENADEEMLRYEFSKHSPIKDLRLVRDKFTHVSRGFAFVHFYSVED 521
L ++ LD + E++LR +F++ I L + +D+ + RG+AFV+F + ED
Sbjct: 195 KPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPED 253
Query: 522 ATKALEATNGT 532
A +A E NGT
Sbjct: 254 ARRAAETVNGT 264
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 418 MCTICSYINFARRTSCYQCNEPRTDDAPAADISSSNSAALGKKGLEAGPTHVLVVRGLDE 477
M + + N ++T+ Q N + +P+ + + + L + G+
Sbjct: 1 MAFLSKFGNILKQTTNKQLNAQVSLSSPSL-----------FQAIRCMSSSKLFIGGMAY 49
Query: 478 NADEEMLRYEFSKHSPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKN 537
+ DE+ LR F+K+ + D R++ D+ T SRGF FV F S E A+ A++A +G L +
Sbjct: 50 SMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDL--H 107
Query: 538 GQILRVAYAK 547
G++++V YA
Sbjct: 108 GRVVKVNYAN 117
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 309 PSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGLSRGFAFIDFPSV-GAAQG 367
PS + V GLS++TT E L A++G + +V+ +R SG S+GF F+ + ++ +A+G
Sbjct: 54 PSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKG 113
Query: 368 MMDKLGDEGLVVDGRKLFFEYS 389
+ G +G +DG +F EY+
Sbjct: 114 IA---GMDGKFLDGWVIFAEYA 132
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 463 EAGPTHVLVVRGLDENADEEMLRYEFSKHSPIKDLRLVRDKFTHVSRGFAFVHFYSVEDA 522
+A P+ L V GL + E LR F++ + D ++V D+ + S+GF FV + ++ED+
Sbjct: 51 QAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDS 110
Query: 523 TKALEATNGTTLEKNGQILRVAYAK 547
K + +G L+ G ++ YA+
Sbjct: 111 AKGIAGMDGKFLD--GWVIFAEYAR 133
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 312 TVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGLSRGFAFIDFPSVGAAQGMMDK 371
+++V ++ +TT +DLY + A++G + V + ++R +G SRGFAF+ + A +++
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 372 LGDEGLVVDGRKLFFEYS 389
L +G VVDGR++ +++
Sbjct: 77 L--DGRVVDGREITVQFA 92
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 312 TVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGLSRGFAFIDFPSVGAAQGMMDK 371
+++V ++ +TT +DLY + A++G + V + ++R +G SRGFAF+ + A +++
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 372 LGDEGLVVDGRKLFFEYS 389
L +G VVDGR++ +++
Sbjct: 77 L--DGRVVDGREITVQFA 92
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 470 LVVRGLDENADEEMLRYEFSKHSPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 529
+ V G+ + DE LR FSK+ + D +++ D+ T SRGFAFV F S E+A+ A++
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-L 94
Query: 530 NGTTLEKNGQILRVAYA 546
+G L +G+ +RV YA
Sbjct: 95 DGQDL--HGRRIRVNYA 109
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 462 LEAGPTHVLVVRGLDENADEEMLRYEFSKHSPIKDLRLVRDKFTHVSRGFAFVHFYSVED 521
L+ P L V LD + +E L F++ +P+ +LR+ RD TH S G+A+V+F + ED
Sbjct: 53 LQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPED 111
Query: 522 ATKALEATN 530
A++A+E+ N
Sbjct: 112 ASRAMESLN 120
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 462 LEAGPTHVLVVRGLDENADEEMLRYEFSKHSPIKDLRLVRDKFTHVSRGFAFVHFYSVED 521
L+ P L V LD + +E L F++ +P+ +LR+ RD TH S G+A+V+F + ED
Sbjct: 53 LQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPED 111
Query: 522 ATKALEATN 530
A++A+E+ N
Sbjct: 112 ASRAMESLN 120