Miyakogusa Predicted Gene

Lj1g3v0118830.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0118830.1 tr|D2VNY6|D2VNY6_NAEGR Predicted protein
OS=Naegleria gruberi GN=NAEGRDRAFT_70664 PE=4 SV=1,33.53,2e-16,no
description,Nucleotide-binding, alpha-beta plait; RNA-BINDING
PROTEIN,NULL; RNA recognition motif,CUFF.25259.1
         (486 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54230.1 | Symbols: SUA | suppressor of abi3-5 | chr3:2007387...   322   3e-88
AT3G54230.2 | Symbols: SUA | suppressor of abi3-5 | chr3:2007387...   322   4e-88

>AT3G54230.1 | Symbols: SUA | suppressor of abi3-5 |
           chr3:20073872-20080142 FORWARD LENGTH=1007
          Length = 1007

 Score =  322 bits (825), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 202/437 (46%), Positives = 244/437 (55%), Gaps = 48/437 (10%)

Query: 1   MLRYEFSKHSPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILR 60
           MLRYEFSKH+PIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATN T LE+NG+ILR
Sbjct: 447 MLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILR 506

Query: 61  VAYAKSILXXXXXXXXXXXXXXXXXXXXXXXTFAQQYDSVGWAPKEYNADDKQCTA---- 116
           VAYAKS+                        TF+QQYD VGWAPKEYN  +KQ T     
Sbjct: 507 VAYAKSVHGSGTGISAPSHSNNLAAAAIEAATFSQQYDGVGWAPKEYNTGEKQNTGGQAQ 566

Query: 117 -----PAQTGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQT 171
                 +Q GT   APQSG+VWDEASGYYYDAASG+YYDGN+GLYYD N+G+WYSYD QT
Sbjct: 567 GVGEIESQKGT--SAPQSGYVWDEASGYYYDAASGYYYDGNSGLYYDSNSGLWYSYDQQT 624

Query: 172 QQYIPCTDQNQNKTANSESEPSKASDGPSSKKVVISAPATTVTSIEKPXXXXXXXXXXXX 231
           QQY+PC DQN N++  +E++P  A    SS++ VI + ATT  ++EK             
Sbjct: 625 QQYVPCPDQN-NESKVTENQPDSAKKEKSSQQKVIISAATT-PNVEKVLSLPDAVQAAAA 682

Query: 232 XXXXXXXXXXXXXXXXXXXSKTSILANKKKMNNVLTMWKQRSHEGQATR--VALDDNQXX 289
                              SKTS+LA+KKKM+NVLTMWKQRSHE Q  R   +L DN   
Sbjct: 683 AAIASEKREKERVKEIKLASKTSLLASKKKMSNVLTMWKQRSHETQIQRPSPSLGDNPPT 742

Query: 290 XXXXXXXXXXGHSAKNKSKNETTV-RESTASNLGVHTTRAQIAATDSQAQPRPVSNSLGG 348
                        +  K K++  + +E + SN GV       +++ S            G
Sbjct: 743 VSAEARSSFSTGQSMGKLKSDVIIAKERSTSNHGVSALTTAESSSSSTTG---------G 793

Query: 349 TLMGVIRGSGRGAVKSDASYXXXXXXXXXXXXXXXXNIDGQSTPTPYRTDVSALGSYTPS 408
           TLMGV+RGS  G +   +S                     Q  P      +    S    
Sbjct: 794 TLMGVMRGSFGGTLGGASSSASV-----------------QMPP------ILPSASPASV 830

Query: 409 VTAGSGRRRFSEMPHSG 425
             +GSGRRRFSE P +G
Sbjct: 831 SVSGSGRRRFSETPTAG 847


>AT3G54230.2 | Symbols: SUA | suppressor of abi3-5 |
           chr3:20073872-20080142 FORWARD LENGTH=1008
          Length = 1008

 Score =  322 bits (825), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 202/437 (46%), Positives = 244/437 (55%), Gaps = 48/437 (10%)

Query: 1   MLRYEFSKHSPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILR 60
           MLRYEFSKH+PIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATN T LE+NG+ILR
Sbjct: 448 MLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILR 507

Query: 61  VAYAKSILXXXXXXXXXXXXXXXXXXXXXXXTFAQQYDSVGWAPKEYNADDKQCTA---- 116
           VAYAKS+                        TF+QQYD VGWAPKEYN  +KQ T     
Sbjct: 508 VAYAKSVHGSGTGISAPSHSNNLAAAAIEAATFSQQYDGVGWAPKEYNTGEKQNTGGQAQ 567

Query: 117 -----PAQTGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQT 171
                 +Q GT   APQSG+VWDEASGYYYDAASG+YYDGN+GLYYD N+G+WYSYD QT
Sbjct: 568 GVGEIESQKGT--SAPQSGYVWDEASGYYYDAASGYYYDGNSGLYYDSNSGLWYSYDQQT 625

Query: 172 QQYIPCTDQNQNKTANSESEPSKASDGPSSKKVVISAPATTVTSIEKPXXXXXXXXXXXX 231
           QQY+PC DQN N++  +E++P  A    SS++ VI + ATT  ++EK             
Sbjct: 626 QQYVPCPDQN-NESKVTENQPDSAKKEKSSQQKVIISAATT-PNVEKVLSLPDAVQAAAA 683

Query: 232 XXXXXXXXXXXXXXXXXXXSKTSILANKKKMNNVLTMWKQRSHEGQATR--VALDDNQXX 289
                              SKTS+LA+KKKM+NVLTMWKQRSHE Q  R   +L DN   
Sbjct: 684 AAIASEKREKERVKEIKLASKTSLLASKKKMSNVLTMWKQRSHETQIQRPSPSLGDNPPT 743

Query: 290 XXXXXXXXXXGHSAKNKSKNETTV-RESTASNLGVHTTRAQIAATDSQAQPRPVSNSLGG 348
                        +  K K++  + +E + SN GV       +++ S            G
Sbjct: 744 VSAEARSSFSTGQSMGKLKSDVIIAKERSTSNHGVSALTTAESSSSSTTG---------G 794

Query: 349 TLMGVIRGSGRGAVKSDASYXXXXXXXXXXXXXXXXNIDGQSTPTPYRTDVSALGSYTPS 408
           TLMGV+RGS  G +   +S                     Q  P      +    S    
Sbjct: 795 TLMGVMRGSFGGTLGGASSSASV-----------------QMPP------ILPSASPASV 831

Query: 409 VTAGSGRRRFSEMPHSG 425
             +GSGRRRFSE P +G
Sbjct: 832 SVSGSGRRRFSETPTAG 848