Miyakogusa Predicted Gene
- Lj1g3v0117760.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0117760.1 Non Chatacterized Hit- tr|A9NMG3|A9NMG3_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,40,8e-19,seg,NULL; coiled-coil,NULL,CUFF.25836.1
(161 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G16660.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 122 1e-28
AT5G16660.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 122 1e-28
AT3G02900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 115 2e-26
AT3G02900.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 114 3e-26
AT1G42960.1 | Symbols: | expressed protein localized to the inn... 63 9e-11
>AT5G16660.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast,
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G02900.1);
Has 106 Blast hits to 106 proteins in 32 species: Archae
- 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 78;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr5:5465699-5467006 REVERSE LENGTH=166
Length = 166
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 69/83 (83%), Gaps = 4/83 (4%)
Query: 82 LAYVFAPQIRRSLLNE-DEYGFRKAKRPIYYDEGLERTRETLNEKISQLNSAIDNVSSRL 140
+AY+FAPQIRRS+LNE DEYGF K K+P YYDEGLE+TRETLNEKI QLNSAIDNVSSRL
Sbjct: 83 VAYIFAPQIRRSVLNEEDEYGFEKPKQPTYYDEGLEKTRETLNEKIGQLNSAIDNVSSRL 142
Query: 141 RG---NNNAPAAQIENDPEVEAT 160
RG N ++ +E DPEVEAT
Sbjct: 143 RGREKNTSSLNVPVETDPEVEAT 165
>AT5G16660.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
thylakoid membrane, chloroplast, membrane, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G02900.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
2996 (source: NCBI BLink). | chr5:5465699-5467006
REVERSE LENGTH=168
Length = 168
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 69/83 (83%), Gaps = 4/83 (4%)
Query: 82 LAYVFAPQIRRSLLNE-DEYGFRKAKRPIYYDEGLERTRETLNEKISQLNSAIDNVSSRL 140
+AY+FAPQIRRS+LNE DEYGF K K+P YYDEGLE+TRETLNEKI QLNSAIDNVSSRL
Sbjct: 85 VAYIFAPQIRRSVLNEEDEYGFEKPKQPTYYDEGLEKTRETLNEKIGQLNSAIDNVSSRL 144
Query: 141 RG---NNNAPAAQIENDPEVEAT 160
RG N ++ +E DPEVEAT
Sbjct: 145 RGREKNTSSLNVPVETDPEVEAT 167
>AT3G02900.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G16660.1); Has 80 Blast
hits to 80 proteins in 21 species: Archae - 0; Bacteria
- 4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr3:645850-647445 FORWARD LENGTH=162
Length = 162
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 68/87 (78%), Gaps = 7/87 (8%)
Query: 81 TLAYVFAPQIRRSLLNEDEYGFRKAKRPIYYDEGLERTRETLNEKISQLNSAIDNVSSRL 140
TLAY+FAPQIRRS+L+E+EYGF+K ++P+YYDEGLE RE LNEKI QLNSAID VSSRL
Sbjct: 75 TLAYIFAPQIRRSVLSENEYGFKKPEQPMYYDEGLEERREILNEKIGQLNSAIDKVSSRL 134
Query: 141 RG-------NNNAPAAQIENDPEVEAT 160
+G N ++P+ +E D E EAT
Sbjct: 135 KGGRSGSSKNTSSPSVPVETDAEAEAT 161
>AT3G02900.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G16660.1). | chr3:645810-647445 FORWARD
LENGTH=161
Length = 161
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 68/87 (78%), Gaps = 7/87 (8%)
Query: 81 TLAYVFAPQIRRSLLNEDEYGFRKAKRPIYYDEGLERTRETLNEKISQLNSAIDNVSSRL 140
TLAY+FAPQIRRS+L+E+EYGF+K ++P+YYDEGLE RE LNEKI QLNSAID VSSRL
Sbjct: 74 TLAYIFAPQIRRSVLSENEYGFKKPEQPMYYDEGLEERREILNEKIGQLNSAIDKVSSRL 133
Query: 141 RG-------NNNAPAAQIENDPEVEAT 160
+G N ++P+ +E D E EAT
Sbjct: 134 KGGRSGSSKNTSSPSVPVETDAEAEAT 160
>AT1G42960.1 | Symbols: | expressed protein localized to the inner
membrane of the chloroplast. | chr1:16125863-16127080
FORWARD LENGTH=168
Length = 168
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 82 LAYVFAPQIRRSLLNEDEYGFRKAKRPIYYDE--GLERTRETLNEKISQLNSAIDNVSSR 139
L V+APQI +++ D + YDE LE+TR+ L EKI+QLNSAID+VSS+
Sbjct: 88 LGCVYAPQISKAIAGADRKDLMRKLPKFIYDEEKALEKTRKVLAEKIAQLNSAIDDVSSQ 147
Query: 140 LRGNNNAPAAQIENDPEVEAT 160
L+ + A + D E+EAT
Sbjct: 148 LKSEDTPNGAALSTD-EIEAT 167