Miyakogusa Predicted Gene
- Lj1g3v0116700.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0116700.1 Non Chatacterized Hit- tr|A9NMG3|A9NMG3_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,42.67,1e-18,coiled-coil,NULL; seg,NULL,CUFF.25829.1
(146 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G16660.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 117 4e-27
AT5G16660.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 116 4e-27
AT3G02900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 111 2e-25
AT3G02900.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 110 4e-25
AT1G42960.1 | Symbols: | expressed protein localized to the inn... 61 3e-10
>AT5G16660.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast,
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G02900.1);
Has 106 Blast hits to 106 proteins in 32 species: Archae
- 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 78;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr5:5465699-5467006 REVERSE LENGTH=166
Length = 166
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/66 (83%), Positives = 60/66 (90%), Gaps = 1/66 (1%)
Query: 78 VFGTLAYVFAPQIRRSLLNE-DEYGFRKAKRPIYYDEGLERTRETLNEKISQLNSAIDNV 136
VFG +AY+FAPQIRRS+LNE DEYGF K K+P YYDEGLE+TRETLNEKI QLNSAIDNV
Sbjct: 79 VFGAVAYIFAPQIRRSVLNEEDEYGFEKPKQPTYYDEGLEKTRETLNEKIGQLNSAIDNV 138
Query: 137 SSRLRG 142
SSRLRG
Sbjct: 139 SSRLRG 144
>AT5G16660.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
thylakoid membrane, chloroplast, membrane, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G02900.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
2996 (source: NCBI BLink). | chr5:5465699-5467006
REVERSE LENGTH=168
Length = 168
Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/66 (83%), Positives = 60/66 (90%), Gaps = 1/66 (1%)
Query: 78 VFGTLAYVFAPQIRRSLLNE-DEYGFRKAKRPIYYDEGLERTRETLNEKISQLNSAIDNV 136
VFG +AY+FAPQIRRS+LNE DEYGF K K+P YYDEGLE+TRETLNEKI QLNSAIDNV
Sbjct: 81 VFGAVAYIFAPQIRRSVLNEEDEYGFEKPKQPTYYDEGLEKTRETLNEKIGQLNSAIDNV 140
Query: 137 SSRLRG 142
SSRLRG
Sbjct: 141 SSRLRG 146
>AT3G02900.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G16660.1); Has 80 Blast
hits to 80 proteins in 21 species: Archae - 0; Bacteria
- 4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr3:645850-647445 FORWARD LENGTH=162
Length = 162
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 59/65 (90%)
Query: 78 VFGTLAYVFAPQIRRSLLNEDEYGFRKAKRPIYYDEGLERTRETLNEKISQLNSAIDNVS 137
VFGTLAY+FAPQIRRS+L+E+EYGF+K ++P+YYDEGLE RE LNEKI QLNSAID VS
Sbjct: 72 VFGTLAYIFAPQIRRSVLSENEYGFKKPEQPMYYDEGLEERREILNEKIGQLNSAIDKVS 131
Query: 138 SRLRG 142
SRL+G
Sbjct: 132 SRLKG 136
>AT3G02900.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G16660.1). | chr3:645810-647445 FORWARD
LENGTH=161
Length = 161
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 59/65 (90%)
Query: 78 VFGTLAYVFAPQIRRSLLNEDEYGFRKAKRPIYYDEGLERTRETLNEKISQLNSAIDNVS 137
VFGTLAY+FAPQIRRS+L+E+EYGF+K ++P+YYDEGLE RE LNEKI QLNSAID VS
Sbjct: 71 VFGTLAYIFAPQIRRSVLSENEYGFKKPEQPMYYDEGLEERREILNEKIGQLNSAIDKVS 130
Query: 138 SRLRG 142
SRL+G
Sbjct: 131 SRLKG 135
>AT1G42960.1 | Symbols: | expressed protein localized to the inner
membrane of the chloroplast. | chr1:16125863-16127080
FORWARD LENGTH=168
Length = 168
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 78 VFGTLAYVFAPQIRRSLLNEDEYGFRKAKRPIYYDE--GLERTRETLNEKISQLNSAIDN 135
+ G L V+APQI +++ D + YDE LE+TR+ L EKI+QLNSAID+
Sbjct: 84 IVGALGCVYAPQISKAIAGADRKDLMRKLPKFIYDEEKALEKTRKVLAEKIAQLNSAIDD 143
Query: 136 VSSRLRGNN 144
VSS+L+ +
Sbjct: 144 VSSQLKSED 152