Miyakogusa Predicted Gene

Lj1g3v0114230.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0114230.2 Non Chatacterized Hit- tr|I1LFV4|I1LFV4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.48211
PE,77.75,0,seg,NULL; P-loop containing nucleoside triphosphate
hydrolases,NULL; Helicase_C,Helicase, C-terminal,CUFF.25235.2
         (451 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14790.1 | Symbols: ATSUV3, EDA15 | ATP-dependent RNA helicas...   573   e-163
AT5G39840.1 | Symbols:  | ATP-dependent RNA helicase, mitochondr...   355   4e-98
AT3G46960.1 | Symbols:  | RNA helicase, ATP-dependent, SK12/DOB1...    49   6e-06

>AT4G14790.1 | Symbols: ATSUV3, EDA15 | ATP-dependent RNA helicase,
           mitochondrial (SUV3) | chr4:8496351-8499829 REVERSE
           LENGTH=571
          Length = 571

 Score =  573 bits (1476), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 265/364 (72%), Positives = 308/364 (84%)

Query: 45  DFTDLTSPHTWYPQARSKRRRVILHVGPTNSGKTYHALKQLESSASGIYCGPLRLLAWEI 104
           DFTDLT PHTWYP AR K+R+VILHVGPTNSGKTY ALK LE S+SG+YCGPLRLLAWE+
Sbjct: 70  DFTDLTCPHTWYPIARKKKRKVILHVGPTNSGKTYSALKHLEQSSSGVYCGPLRLLAWEV 129

Query: 105 AKRLNKANVPCDLITGQEREEVDGANHRAATVEMADVSSDYQCAVIDEIQMLGCSTRGYS 164
           AKRLNKANVPCDLITGQE++ V+GA H+A TVEMADV+S Y CA+IDEIQM+GC  RG++
Sbjct: 130 AKRLNKANVPCDLITGQEKDLVEGATHKAVTVEMADVTSVYDCAIIDEIQMVGCKQRGFA 189

Query: 165 FTRALLGIAADELHLCGDPAAVPLVQEMLKITGDEVEVKFYERLSPLVPLKVPLGSFSNV 224
           FTRALLGIAADELHLCGDPA VPLV+++LK+TGD+VEV  YERLSPLVPLKVP+ S S++
Sbjct: 190 FTRALLGIAADELHLCGDPAVVPLVEDILKVTGDDVEVHTYERLSPLVPLKVPVSSVSSI 249

Query: 225 RNGDCIVTFSRKDIYGLKKKIEREGRHLCSVVYGSLPPETRTRQATMFNDASSEFDVLVA 284
           + GDC+VTFSRKDIY  KK IER G+HLCSVVYGSLPPETRT QAT FND +++FDVLVA
Sbjct: 250 KTGDCLVTFSRKDIYAYKKTIERAGKHLCSVVYGSLPPETRTAQATRFNDETNDFDVLVA 309

Query: 285 SDAIGMGLNLNISRIIFSTMKKFDGFEMRDLTVPEIKQIAGRAGRYGSNFPVGEVTCMDA 344
           SDAIGMGLNLNISRIIFST++K+DG E RDLTV EIKQIAGRAGR+ S FP+GEVTC+  
Sbjct: 310 SDAIGMGLNLNISRIIFSTLQKYDGSETRDLTVSEIKQIAGRAGRFQSKFPIGEVTCLHK 369

Query: 345 DDXXXXXXXXXXXXXILERAGLLPTYELMYMYSRLHPKYGFCQVLEHFIDNAKLSENYFI 404
           +D             ILERAGL PT++L+  YS+ HP +G  Q+LEHF++NAKLS NYFI
Sbjct: 370 EDLPLLHSSLKSPSPILERAGLFPTFDLLSGYSQAHPTHGLYQILEHFVENAKLSSNYFI 429

Query: 405 VNCE 408
            N E
Sbjct: 430 SNVE 433


>AT5G39840.1 | Symbols:  | ATP-dependent RNA helicase,
           mitochondrial, putative | chr5:15946769-15949186 FORWARD
           LENGTH=776
          Length = 776

 Score =  355 bits (911), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 167/384 (43%), Positives = 252/384 (65%), Gaps = 3/384 (0%)

Query: 24  FHLYFQFKVHPYSTRTASIRN--DFTDLTSPHTWYPQARSKRRRVILHVGPTNSGKTYHA 81
           F ++ +F +  +       ++  D  DLT P TW+P AR+ +R+++ H GPTNSGKTY+A
Sbjct: 232 FPVFVEFCIEEFPDEIKRFKSIVDTADLTKPATWFPFARAMKRKIVYHCGPTNSGKTYNA 291

Query: 82  LKQLESSASGIYCGPLRLLAWEIAKRLNKANVPCDLITGQEREEVDGANHRAATVEMADV 141
           L++   + +G+YC PLRLLA E+  ++N   + C L+TGQE++ V  ANH + TVEM   
Sbjct: 292 LQRFMEAKNGLYCSPLRLLAMEVFDKVNALGIYCSLLTGQEKKYVPFANHVSCTVEMVST 351

Query: 142 SSDYQCAVIDEIQMLGCSTRGYSFTRALLGIAADELHLCGDPAAVPLVQEMLKITGDEVE 201
              Y+ AV+DEIQM+   +RG+++T+ALLG+ ADE+HLCGDP+ + +V++M   TGDE+ 
Sbjct: 352 DELYEVAVLDEIQMMADPSRGHAWTKALLGLKADEIHLCGDPSVLDIVRKMCADTGDELV 411

Query: 202 VKFYERLSPL-VPLKVPLGSFSNVRNGDCIVTFSRKDIYGLKKKIEREGRHLCSVVYGSL 260
            + YER  PL V  K  LG   NV++GDC+V FSR++I+ +K  IE+   H C V+YG+L
Sbjct: 412 EEHYERFKPLVVEAKTLLGELKNVKSGDCVVAFSRREIFEVKMAIEKHTNHRCCVIYGAL 471

Query: 261 PPETRTRQATMFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGFEMRDLTVPEI 320
           PPETR +QA +FND  +E+DVLVASDA+GMGLNLNI R++F ++ K++G ++  +   ++
Sbjct: 472 PPETRRQQAKLFNDQENEYDVLVASDAVGMGLNLNIRRVVFYSLNKYNGDKIVPVAASQV 531

Query: 321 KQIAGRAGRYGSNFPVGEVTCMDADDXXXXXXXXXXXXXILERAGLLPTYELMYMYSRLH 380
           KQIAGRAGR GS +P G  T +  +D              + + GL P +E + +++   
Sbjct: 532 KQIAGRAGRRGSRYPDGLTTTLHLEDLNYLIECLQQPFDEVTKVGLFPFFEQIELFAAQV 591

Query: 381 PKYGFCQVLEHFIDNAKLSENYFI 404
           P   F  +LEHF  + +L  +YF+
Sbjct: 592 PDMAFSNLLEHFGKHCRLDGSYFL 615


>AT3G46960.1 | Symbols:  | RNA helicase, ATP-dependent, SK12/DOB1
           protein | chr3:17291004-17298067 REVERSE LENGTH=1347
          Length = 1347

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 281 VLVASDAIGMGLNLNISRIIFSTMKKFDGFEMRDLTVPEIKQIAGRAGRYGSNFPVGEVT 340
           VL +++   MG+N     ++F  ++KFDG E R L   E  Q+AGRAGR G +   G V 
Sbjct: 741 VLFSTETFAMGVNAPARTVVFDALRKFDGKEFRQLLPGEYTQMAGRAGRRGLD-KTGTVV 799

Query: 341 CMDADD 346
            M  D+
Sbjct: 800 VMCRDE 805