Miyakogusa Predicted Gene

Lj1g3v0114190.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0114190.2 Non Chatacterized Hit- tr|I1KKG6|I1KKG6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.23437
PE,69.97,0,SCO1-SenC,Copper chaperone SCO1/SenC;
Thioredoxin-like,Thioredoxin-like fold; SCO1/SENC,Copper
chape,CUFF.25230.2
         (324 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08950.1 | Symbols: HCC1 | electron transport SCO1/SenC famil...   373   e-104
AT4G39740.1 | Symbols:  | Thioredoxin superfamily protein | chr4...   159   3e-39

>AT3G08950.1 | Symbols: HCC1 | electron transport SCO1/SenC family
           protein | chr3:2727285-2729289 FORWARD LENGTH=334
          Length = 334

 Score =  373 bits (958), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/311 (60%), Positives = 221/311 (71%), Gaps = 22/311 (7%)

Query: 36  SSSVLQSSQPMPMVGNQGFGNGVL--------LTC--------QRFLSSKAAPSTTNQ-- 77
           SS +L +S P P   +    +G          L C        QR L S +A  TT++  
Sbjct: 24  SSDLLSASSPSPACISDALRHGDFSLPRSFFSLNCGIEMLKMDQRCLLSTSASDTTSKHD 83

Query: 78  ----EKPASDNXXXXXXXXXXXXXXXXXXXTDAGKAVRGSPVSWLSFVLLVLTGAGLVFY 133
               E  +S+                      +GK VRG PVSW+SF LL  TGAGLV+Y
Sbjct: 84  SGKPETKSSEKNEKSGGSESSDGGSDHKNERASGKDVRGGPVSWMSFFLLFATGAGLVYY 143

Query: 134 YDREKKRHIEDIHSASEAVKHGPSAGKAAIGGPFHLTNHHGKRVTEKDFLGKWTVMYFGF 193
           YD +KKRHIEDI+  S AVK GPSAGKAAIGGPF L    GKRVTEK+ +GKWT++YFGF
Sbjct: 144 YDTQKKRHIEDINKNSIAVKEGPSAGKAAIGGPFSLIRDDGKRVTEKNLMGKWTILYFGF 203

Query: 194 THCPDICPDELQKLADAVDKIKEKSGIEIVPVFISVDPERDTVEQVGEYVKEFHPKLIGL 253
           THCPDICPDEL KLA A+DKIKE SG+++VPVFISVDPERDTV+QV EYVKEFHPKLIGL
Sbjct: 204 THCPDICPDELIKLAAAIDKIKENSGVDVVPVFISVDPERDTVQQVHEYVKEFHPKLIGL 263

Query: 254 TGSSDEIKSVARAYRVYYMKTAEEDSDYLVDHSIVMYLMGPDMNFVKFFGKNNDADSLAD 313
           TGS +EIKSVAR+YRVYYMKT EEDSDYLVDHSIVMYLM P+MNFVKF+GKN+D DSL D
Sbjct: 264 TGSPEEIKSVARSYRVYYMKTEEEDSDYLVDHSIVMYLMSPEMNFVKFYGKNHDVDSLTD 323

Query: 314 GIIKEIKQYKK 324
           G++KEI+QY+K
Sbjct: 324 GVVKEIRQYRK 334


>AT4G39740.1 | Symbols:  | Thioredoxin superfamily protein |
           chr4:18435586-18437095 REVERSE LENGTH=276
          Length = 276

 Score =  159 bits (401), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/201 (37%), Positives = 123/201 (61%), Gaps = 2/201 (0%)

Query: 121 VLLVLTGAGLVFYYDREKKRHIEDIHSASEAVKHGPSAGKAA--IGGPFHLTNHHGKRVT 178
           +LL   G     +Y+ E++       S++     G +       IGGPF L +   K VT
Sbjct: 71  ILLGFAGFVGFLHYNDERRAVPRGQASSNSGCGCGSNTTVKGPIIGGPFTLVSTENKIVT 130

Query: 179 EKDFLGKWTVMYFGFTHCPDICPDELQKLADAVDKIKEKSGIEIVPVFISVDPERDTVEQ 238
           E DF GKW ++YFG++  PD+ P++L+ ++ AVDK++ K   +I+PVF+++DP+RDT   
Sbjct: 131 ENDFCGKWVLLYFGYSFSPDVGPEQLKMMSKAVDKLESKHNEKILPVFVTLDPQRDTPSH 190

Query: 239 VGEYVKEFHPKLIGLTGSSDEIKSVARAYRVYYMKTAEEDSDYLVDHSIVMYLMGPDMNF 298
           +  Y+KEF  +++GLTG++  ++ +A+ YRVY+ K  E+  DYLVD S  MYL+ P M  
Sbjct: 191 LHAYLKEFDSRILGLTGTASAMRQMAQEYRVYFKKVQEDGEDYLVDTSHNMYLINPKMEI 250

Query: 299 VKFFGKNNDADSLADGIIKEI 319
           V+ FG   + D L+  ++KE+
Sbjct: 251 VRCFGVEYNPDELSQELLKEV 271