Miyakogusa Predicted Gene

Lj1g3v0112940.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0112940.2 Non Chatacterized Hit- tr|H3HN80|H3HN80_STRPU
Uncharacterized protein OS=Strongylocentrotus
purpurat,34.55,0.0000000003,coiled-coil,NULL,CUFF.25221.2
         (168 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32980.1 | Symbols:  | unknown protein; Has 158 Blast hits to...   286   4e-78

>AT2G32980.1 | Symbols:  | unknown protein; Has 158 Blast hits to
           154 proteins in 73 species: Archae - 0; Bacteria - 61;
           Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 28; Other
           Eukaryotes - 14 (source: NCBI BLink). |
           chr2:13997569-13999715 REVERSE LENGTH=296
          Length = 296

 Score =  286 bits (732), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 137/168 (81%), Positives = 156/168 (92%), Gaps = 1/168 (0%)

Query: 1   MSMGSESSWVGKKPVKRIGGMSDALSIASDLGFSVSSLPTHQEALQNPSTATGEKGEDLI 60
           MSMG +++WVGKKP++RIGG+SDALSIASDLGF+V+  P+ QE LQ+ +++ GE+G+DLI
Sbjct: 1   MSMGGDTTWVGKKPIRRIGGLSDALSIASDLGFAVAPPPS-QEELQSFASSNGERGDDLI 59

Query: 61  KVLRELTTVQRKIADLQVELQGRKDDKNVAHLTHVSEMEKKIETLEWITTILKDVIQNKD 120
           +VLREL+ VQRKIADLQVELQGRKDDKNVAHLTHV EM+KKIETL  IT ILKDVIQNKD
Sbjct: 60  RVLRELSVVQRKIADLQVELQGRKDDKNVAHLTHVGEMQKKIETLSRITQILKDVIQNKD 119

Query: 121 RIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVADFQW 168
           RIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASV+DFQW
Sbjct: 120 RIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVSDFQW 167