Miyakogusa Predicted Gene

Lj1g3v0112820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0112820.1 Non Chatacterized Hit- tr|I1LE02|I1LE02_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.32517
PE,63.1,6e-18,EARLY LIGHT-INDUCED PROTEIN,NULL; UPF0041 BRAIN PROTEIN
44-RELATED,NULL; seg,NULL,NODE_41282_length_233_cov_69.356224.path1.1
         (81 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22840.1 | Symbols: ELIP1, ELIP | Chlorophyll A-B binding fam...    66   5e-12
AT4G14690.1 | Symbols: ELIP2 | Chlorophyll A-B binding family pr...    62   1e-10

>AT3G22840.1 | Symbols: ELIP1, ELIP | Chlorophyll A-B binding family
           protein | chr3:8084628-8085445 REVERSE LENGTH=195
          Length = 195

 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 36/37 (97%)

Query: 44  KFSDVMAFGGPAPERINGRLAMIGFVAAMAVEVARGQ 80
           KFSD++AF GPAPERINGRLAM+GFVAA+AVE+++G+
Sbjct: 85  KFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKGE 121


>AT4G14690.1 | Symbols: ELIP2 | Chlorophyll A-B binding family
           protein | chr4:8418373-8419129 FORWARD LENGTH=193
          Length = 193

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 35/37 (94%)

Query: 44  KFSDVMAFGGPAPERINGRLAMIGFVAAMAVEVARGQ 80
           KF D++AF GPAPERINGRLAM+GFVAA+A+E+++G+
Sbjct: 83  KFGDLLAFSGPAPERINGRLAMVGFVAAIAMELSKGE 119