Miyakogusa Predicted Gene

Lj1g3v0112700.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0112700.2 Non Chatacterized Hit- tr|B9S4N1|B9S4N1_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,33.53,0.000000003,tify,Tify; CCT_2,CO/COL/TOC1, conserved site; no
description,Tify; TIFY,Tify; seg,NULL,CUFF.25219.2
         (340 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14713.2 | Symbols: PPD1, TIFY4A | TIFY domain/Divergent CCT ...   121   7e-28
AT4G14720.1 | Symbols: PPD2, TIFY4B | TIFY domain/Divergent CCT ...   109   2e-24
AT4G14713.1 | Symbols: PPD1, TIFY4A | TIFY domain/Divergent CCT ...   105   4e-23

>AT4G14713.2 | Symbols: PPD1, TIFY4A | TIFY domain/Divergent CCT
           motif family protein | chr4:8427388-8429525 REVERSE
           LENGTH=261
          Length = 261

 Score =  121 bits (303), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 120/257 (46%), Gaps = 31/257 (12%)

Query: 15  RSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPTDED 74
           +SIL KPLK LTE+DISQLTREDCR+FLK+KGMRRPSWNKSQAIQQV+SLKAL EP D+ 
Sbjct: 9   KSILAKPLKLLTEEDISQLTREDCRKFLKDKGMRRPSWNKSQAIQQVLSLKALYEPGDDS 68

Query: 75  XXXXXXXXXXXXXXXXXXXXXGRNLNXXXXXXXXXXXXXXXXXXXXPQKSPSA---EKLP 131
                                G  +                     P     A      P
Sbjct: 69  ---------------------GAGIFRKILVSQPVNPPRVTTTLIEPSNELEACGRVSYP 107

Query: 132 ETNDA--NVVSPRGCASSGSFGQMTIFYCGKVNVYDGVSPDKARSIMQ----LAASPVQC 185
           E N A   + SPR    SG  G       G        SP +   ++       +  V  
Sbjct: 108 EDNGACHRMDSPRSAEFSGGSGHFVSEKDGHKTTISPRSPAETSELVGQMTIFYSGKVNV 167

Query: 186 PQDDPSNKNAAVWA-STCPSLMDKDALFPVDTAILQVAQTDKMVEYPLQYREKVSIPRDA 244
               P  K  ++   +  P  + ++ +F     I ++   +KM+E P +  EK +  RD+
Sbjct: 168 YDGIPPEKARSIMHFAANPIDLPENGIFASSRMISKLISKEKMMELPQKGLEKANSSRDS 227

Query: 245 DVEGQASRKVSVQRYLE 261
            +EGQA+RKVS+QRY E
Sbjct: 228 GMEGQANRKVSLQRYRE 244


>AT4G14720.1 | Symbols: PPD2, TIFY4B | TIFY domain/Divergent CCT
           motif family protein | chr4:8432452-8434934 REVERSE
           LENGTH=315
          Length = 315

 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 81/150 (54%), Gaps = 22/150 (14%)

Query: 139 VSPRGCASSGSF-GQMTIFYCGKVNVYDGVSPDKARSIMQLAASPVQCPQDDPSNKNAAV 197
           VSPR  A + +  GQMTIFY GKVNVYDGV P+KARSIM  AA+P+  P+          
Sbjct: 143 VSPRSPAETNAVVGQMTIFYSGKVNVYDGVPPEKARSIMHFAANPIDLPE---------- 192

Query: 198 WASTCPSLMDKDALFPVDTAILQVAQTDKMVEYPLQYREKVSIPRDADVEGQASRKVSVQ 257
                      + +F     I +    +KMVE P    EK    RD+DVEGQA+RKVS+Q
Sbjct: 193 -----------NGIFASSRMISKPMSKEKMVELPQYGLEKAPASRDSDVEGQANRKVSLQ 241

Query: 258 RYLEXXXXXXXXXXXXSTSVTSSNFDMYVN 287
           RYLE            +  V SS+ +M++N
Sbjct: 242 RYLEKRKDRRFSKTKKAPGVASSSLEMFLN 271



 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 56/59 (94%)

Query: 15 RSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPTDE 73
          +SIL+KPLK LTE+DISQLTREDCR+FLKEKGMRRPSWNKSQAIQQV+SLKAL EP D+
Sbjct: 9  KSILEKPLKLLTEEDISQLTREDCRKFLKEKGMRRPSWNKSQAIQQVLSLKALYEPGDD 67


>AT4G14713.1 | Symbols: PPD1, TIFY4A | TIFY domain/Divergent CCT
          motif family protein | chr4:8427084-8429525 REVERSE
          LENGTH=313
          Length = 313

 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/59 (83%), Positives = 55/59 (93%)

Query: 15 RSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPTDE 73
          +SIL KPLK LTE+DISQLTREDCR+FLK+KGMRRPSWNKSQAIQQV+SLKAL EP D+
Sbjct: 9  KSILAKPLKLLTEEDISQLTREDCRKFLKDKGMRRPSWNKSQAIQQVLSLKALYEPGDD 67



 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 80/151 (52%), Gaps = 22/151 (14%)

Query: 138 VVSPRGCASSGSF-GQMTIFYCGKVNVYDGVSPDKARSIMQLAASPVQCPQDDPSNKNAA 196
            +SPR  A +    GQMTIFY GKVNVYDG+ P+KARSIM  AA+P+  P+         
Sbjct: 141 TISPRSPAETSELVGQMTIFYSGKVNVYDGIPPEKARSIMHFAANPIDLPE--------- 191

Query: 197 VWASTCPSLMDKDALFPVDTAILQVAQTDKMVEYPLQYREKVSIPRDADVEGQASRKVSV 256
                       + +F     I ++   +KM+E P +  EK +  RD+ +EGQA+RKVS+
Sbjct: 192 ------------NGIFASSRMISKLISKEKMMELPQKGLEKANSSRDSGMEGQANRKVSL 239

Query: 257 QRYLEXXXXXXXXXXXXSTSVTSSNFDMYVN 287
           QRY E               V SS+ +M++N
Sbjct: 240 QRYREKRKDRKFSKAKKCPGVASSSLEMFLN 270