Miyakogusa Predicted Gene

Lj1g3v0102560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0102560.1 Non Chatacterized Hit- tr|I1NGH9|I1NGH9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.398
PE=4,78.57,0.000000000000003,Homocysteine
S-methyltransferase,Homocysteine S-methyltransferase;
S-methyl_trans,Homocysteine S-met,gene.g28835.t1.1
         (263 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22740.1 | Symbols: HMT3 | homocysteine S-methyltransferase 3...   302   1e-82
AT3G63250.1 | Symbols: HMT-2, ATHMT-2, HMT2 | homocysteine methy...   289   1e-78
AT3G25900.3 | Symbols: HMT-1 | Homocysteine S-methyltransferase ...   251   3e-67
AT3G25900.2 | Symbols: HMT-1, ATHMT-1 | Homocysteine S-methyltra...   234   3e-62
AT3G25900.1 | Symbols: HMT-1, ATHMT-1 | Homocysteine S-methyltra...   233   7e-62
AT3G63250.2 | Symbols: HMT-2, ATHMT-2, HMT2 | homocysteine methy...   209   2e-54

>AT3G22740.1 | Symbols: HMT3 | homocysteine S-methyltransferase 3 |
           chr3:8033200-8035710 REVERSE LENGTH=347
          Length = 347

 Score =  302 bits (774), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 146/213 (68%), Positives = 171/213 (80%)

Query: 1   MRDFLDKCGGYAVIDGGFATELERHGADLHDPLWSAKCLISSPHLVRRVHLDYLDAGANI 60
           M DFL+KCGGYAV+DGGFATEL+RHGAD++DPLWSAKCLI+SPHLV +VHLDYL++GANI
Sbjct: 13  MTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLESGANI 72

Query: 61  ILTASYQATLQGFEAKGFSREEGETLLRRSVELALEAREIYNARCTKDSSDFIRDERYRR 120
           I+TASYQAT+QGF AKG S  E E LLRRSVE+  EAREI+  RCTK S DF    +  R
Sbjct: 73  IITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAGKASR 132

Query: 121 RPILVAASVGSYGAYLADGAEYTGDYGDAVTVQTLKDFHRERVKILVDAGADLIAFETIP 180
           RPILVAASVGSYGAYLADG+EY+G YGD+V+ +TLKDFHR RV+IL  +GADLIAFETIP
Sbjct: 133 RPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAFETIP 192

Query: 181 NKMXXXXXXXXXXXXGIEIPAWLSFSCKDESNV 213
           NK+             I+IPAW SF+ KD  +V
Sbjct: 193 NKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSV 225



 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 38/49 (77%)

Query: 213 VKSSGVAERDFVPYIDKWCDAGASLFGGCCRTTPNTIRGIAEAIYGKPQ 261
           +KS G +E DFV Y+ KW DAGASLFGGCCRTTPNTIR IA+ +  +P 
Sbjct: 290 IKSEGESEEDFVSYVSKWRDAGASLFGGCCRTTPNTIRAIAKVLSDEPS 338


>AT3G63250.1 | Symbols: HMT-2, ATHMT-2, HMT2 | homocysteine
           methyltransferase 2 | chr3:23370575-23372587 REVERSE
           LENGTH=333
          Length = 333

 Score =  289 bits (739), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 148/263 (56%), Positives = 192/263 (73%), Gaps = 9/263 (3%)

Query: 1   MRDFLDKCGGYAVIDGGFATELERHGADLHDPLWSAKCLISSPHLVRRVHLDYLDAGANI 60
           M+DFL + GGYAVIDGG ATE ERHGADL+DPLWSAKCL++SPHL+  VHLDYL+AGA+I
Sbjct: 9   MKDFLKQTGGYAVIDGGLATEFERHGADLNDPLWSAKCLVTSPHLIHTVHLDYLEAGADI 68

Query: 61  ILTASYQATLQGFEAKGFSREEGETLLRRSVELALEAREIYNARCTKDSSDFIRDERYRR 120
           I +ASYQAT+QGFEAKGFSREE E+LL++SVE+A EAR  Y  +C   SS  + D+  ++
Sbjct: 69  ISSASYQATIQGFEAKGFSREESESLLKKSVEIATEARNSYYDKCGTSSS--MDDKILKK 126

Query: 121 RPILVAASVGSYGAYLADGAEYTGDYGDAVTVQTLKDFHRERVKILVDAGADLIAFETIP 180
           RPILVAASVGSYGAYLADG+EY+G YGD++T++ LKDFHR R+++L ++GADLIAFETIP
Sbjct: 127 RPILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADLIAFETIP 186

Query: 181 NKMXXXXXXXXXXXXGIEIPAWLSFSCKDESNVKSSGVAERDFVPYIDKWCDAGASLFGG 240
           NK+             ++IP W SF+ KD  NV  SG + ++ +  I + C+   ++   
Sbjct: 187 NKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNV-VSGDSIKECIS-IAENCEKVVAVGIN 244

Query: 241 CCRTTPNTIRGIA---EAIYGKP 260
           C  T P  I G+    E +  KP
Sbjct: 245 C--TPPRFIEGLVLEIEKVTSKP 265



 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 213 VKSSGVAERDFVPYIDKWCDAGASLFGGCCRTTPNTIRGI 252
           V+++GV + DFV Y++KW DAG SL GGCCRTTP TIR I
Sbjct: 284 VENTGVGDEDFVSYVEKWMDAGVSLLGGCCRTTPTTIRAI 323


>AT3G25900.3 | Symbols: HMT-1 | Homocysteine S-methyltransferase
           family protein | chr3:9480964-9482684 FORWARD LENGTH=306
          Length = 306

 Score =  251 bits (642), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 132/298 (44%), Positives = 183/298 (61%), Gaps = 52/298 (17%)

Query: 1   MRDFLDKCGGYAVIDGGFATELERHGADLHDPLWSAKCLISSPHLVRRVHLDYLDAGANI 60
           + D + KCGG AV+DGGFAT+LE HGA ++DPLWSA  LI +P L++RVH++YL+AGA+I
Sbjct: 10  LEDLIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLEAGADI 69

Query: 61  ILTASYQATLQGFEAKGFSREEGETLLRRSVELALEAREIYNARCTKDSSDFIRDERYRR 120
           ++T+SYQAT+ GF ++G S EE E+LL++SVELA+EAR+ +  + +K     +    Y R
Sbjct: 70  VVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSK-----VSGHSYNR 124

Query: 121 RPILVAASVGSYGAYLADGAEYTGDYGDAVTVQTLKDFHRERVKILVDAGADLIAFETIP 180
              LVAAS+GSYGAYLADG+EY+G YG+ V++  LKDFHR R+++LV+AG DL+AFETIP
Sbjct: 125 --ALVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETIP 182

Query: 181 NKMXXXXXXXXXXXXGIEIPAWLSFSCKD------------------ESN---------- 212
           NK+             ++IPAW+ F+  D                  +SN          
Sbjct: 183 NKLEAQACVELLEEEKVQIPAWICFTSVDGEKAPSGESFEECLEPLNKSNNIYALTKKAI 242

Query: 213 -----------------VKSSGVAERDFVPYIDKWCDAGASLFGGCCRTTPNTIRGIA 253
                            + S    + +F  +  KW D GA L GGCCRTTP+TI  I+
Sbjct: 243 VVYPNSGEVWDGKAKQWLPSQCFGDDEFEMFATKWRDLGAKLIGGCCRTTPSTINAIS 300


>AT3G25900.2 | Symbols: HMT-1, ATHMT-1 | Homocysteine
           S-methyltransferase family protein |
           chr3:9480964-9482416 FORWARD LENGTH=268
          Length = 268

 Score =  234 bits (598), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 111/209 (53%), Positives = 155/209 (74%), Gaps = 7/209 (3%)

Query: 1   MRDFLDKCGGYAVIDGGFATELERHGADLHDPLWSAKCLISSPHLVRRVHLDYLDAGANI 60
           + D + KCGG AV+DGGFAT+LE HGA ++DPLWSA  LI +P L++RVH++YL+AGA+I
Sbjct: 10  LEDLIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLEAGADI 69

Query: 61  ILTASYQATLQGFEAKGFSREEGETLLRRSVELALEAREIYNARCTKDSSDFIRDERYRR 120
           ++T+SYQAT+ GF ++G S EE E+LL++SVELA+EAR+ +  + +K     +    Y R
Sbjct: 70  VVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSK-----VSGHSYNR 124

Query: 121 RPILVAASVGSYGAYLADGAEYTGDYGDAVTVQTLKDFHRERVKILVDAGADLIAFETIP 180
              LVAAS+GSYGAYLADG+EY+G YG+ V++  LKDFHR R+++LV+AG DL+AFETIP
Sbjct: 125 A--LVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETIP 182

Query: 181 NKMXXXXXXXXXXXXGIEIPAWLSFSCKD 209
           NK+             ++IPAW+ F+  D
Sbjct: 183 NKLEAQACVELLEEEKVQIPAWICFTSVD 211


>AT3G25900.1 | Symbols: HMT-1, ATHMT-1 | Homocysteine
           S-methyltransferase family protein |
           chr3:9480964-9482684 FORWARD LENGTH=326
          Length = 326

 Score =  233 bits (595), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 111/209 (53%), Positives = 155/209 (74%), Gaps = 7/209 (3%)

Query: 1   MRDFLDKCGGYAVIDGGFATELERHGADLHDPLWSAKCLISSPHLVRRVHLDYLDAGANI 60
           + D + KCGG AV+DGGFAT+LE HGA ++DPLWSA  LI +P L++RVH++YL+AGA+I
Sbjct: 10  LEDLIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLEAGADI 69

Query: 61  ILTASYQATLQGFEAKGFSREEGETLLRRSVELALEAREIYNARCTKDSSDFIRDERYRR 120
           ++T+SYQAT+ GF ++G S EE E+LL++SVELA+EAR+ +  + +K     +    Y R
Sbjct: 70  VVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSK-----VSGHSYNR 124

Query: 121 RPILVAASVGSYGAYLADGAEYTGDYGDAVTVQTLKDFHRERVKILVDAGADLIAFETIP 180
              LVAAS+GSYGAYLADG+EY+G YG+ V++  LKDFHR R+++LV+AG DL+AFETIP
Sbjct: 125 A--LVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETIP 182

Query: 181 NKMXXXXXXXXXXXXGIEIPAWLSFSCKD 209
           NK+             ++IPAW+ F+  D
Sbjct: 183 NKLEAQACVELLEEEKVQIPAWICFTSVD 211


>AT3G63250.2 | Symbols: HMT-2, ATHMT-2, HMT2 | homocysteine
           methyltransferase 2 | chr3:23370575-23371974 REVERSE
           LENGTH=293
          Length = 293

 Score =  209 bits (531), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 113/219 (51%), Positives = 153/219 (69%), Gaps = 9/219 (4%)

Query: 45  LVRRVHLDYLDAGANIILTASYQATLQGFEAKGFSREEGETLLRRSVELALEAREIYNAR 104
           L+ +VHLDYL+AGA+II +ASYQAT+QGFEAKGFSREE E+LL++SVE+A EAR  Y  +
Sbjct: 13  LMEQVHLDYLEAGADIISSASYQATIQGFEAKGFSREESESLLKKSVEIATEARNSYYDK 72

Query: 105 CTKDSSDFIRDERYRRRPILVAASVGSYGAYLADGAEYTGDYGDAVTVQTLKDFHRERVK 164
           C   SS  + D+  ++RPILVAASVGSYGAYLADG+EY+G YGD++T++ LKDFHR R++
Sbjct: 73  CGTSSS--MDDKILKKRPILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQ 130

Query: 165 ILVDAGADLIAFETIPNKMXXXXXXXXXXXXGIEIPAWLSFSCKDESNVKSSGVAERDFV 224
           +L ++GADLIAFETIPNK+             ++IP W SF+ KD  NV  SG + ++ +
Sbjct: 131 VLAESGADLIAFETIPNKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNV-VSGDSIKECI 189

Query: 225 PYIDKWCDAGASLFGGCCRTTPNTIRGIA---EAIYGKP 260
             I + C+   ++   C  T P  I G+    E +  KP
Sbjct: 190 S-IAENCEKVVAVGINC--TPPRFIEGLVLEIEKVTSKP 225



 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 213 VKSSGVAERDFVPYIDKWCDAGASLFGGCCRTTPNTIRGI 252
           V+++GV + DFV Y++KW DAG SL GGCCRTTP TIR I
Sbjct: 244 VENTGVGDEDFVSYVEKWMDAGVSLLGGCCRTTPTTIRAI 283