Miyakogusa Predicted Gene

Lj1g3v0101540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0101540.1 tr|Q1WK56|Q1WK56_LOTJA CYC3 OS=Lotus japonicus
PE=2 SV=1,99.46,0,TCP,Transcription factor TCP subgroup; R,CYC/TB1, R
domain; seg,NULL; TCP,Transcription factor, TCP,gene.g28833.t1.1
         (370 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67260.2 | Symbols: TCP1 | TCP family transcription factor  |...    95   6e-20
AT1G67260.1 | Symbols: TCP1 | TCP family transcription factor  |...    95   7e-20
AT1G68800.1 | Symbols: BRC2, TCP12 | TCP domain protein 12 | chr...    93   4e-19
AT1G53230.1 | Symbols: TCP3 | TEOSINTE BRANCHED 1, cycloidea and...    84   2e-16
AT3G15030.3 | Symbols: TCP4 | TCP family transcription factor 4 ...    80   2e-15
AT3G15030.2 | Symbols: TCP4 | TCP family transcription factor 4 ...    80   2e-15
AT3G15030.1 | Symbols: TCP4, MEE35 | TCP family transcription fa...    80   2e-15
AT2G31070.1 | Symbols: TCP10 | TCP domain protein 10 | chr2:1322...    78   8e-15
AT3G18550.1 | Symbols: BRC1, TCP18, ATTCP18 | TCP family transcr...    76   3e-14
AT3G18550.2 | Symbols: BRC1, TCP18, ATTCP18 | TCP family transcr...    76   3e-14
AT4G18390.2 | Symbols: TCP2 | TEOSINTE BRANCHED 1, cycloidea and...    75   5e-14
AT4G18390.1 | Symbols: TCP2 | TEOSINTE BRANCHED 1, cycloidea and...    75   5e-14
AT1G30210.2 | Symbols: TCP24 | TEOSINTE BRANCHED 1, cycloidea, a...    74   1e-13
AT1G30210.1 | Symbols: TCP24, ATTCP24 | TEOSINTE BRANCHED 1, cyc...    74   1e-13
AT3G02150.2 | Symbols: PTF1, TFPD | plastid transcription factor...    66   3e-11
AT3G02150.1 | Symbols: PTF1, TCP13, TFPD | plastid transcription...    66   4e-11
AT5G60970.1 | Symbols: TCP5 | TEOSINTE BRANCHED 1, cycloidea and...    63   3e-10
AT5G08070.1 | Symbols: TCP17 | TCP domain protein 17 | chr5:2584...    59   6e-09

>AT1G67260.2 | Symbols: TCP1 | TCP family transcription factor  |
           chr1:25168152-25169307 REVERSE LENGTH=351
          Length = 351

 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 50/63 (79%)

Query: 112 TTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQE 171
             KKDRHSKI T+QG+RDRRVRLS  IAR+FFDLQDML FDK S TL+WL  KS  AI+E
Sbjct: 85  VVKKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKE 144

Query: 172 LAR 174
           + +
Sbjct: 145 VVQ 147


>AT1G67260.1 | Symbols: TCP1 | TCP family transcription factor  |
           chr1:25168228-25169307 REVERSE LENGTH=359
          Length = 359

 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 50/63 (79%)

Query: 112 TTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQE 171
             KKDRHSKI T+QG+RDRRVRLS  IAR+FFDLQDML FDK S TL+WL  KS  AI+E
Sbjct: 85  VVKKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKE 144

Query: 172 LAR 174
           + +
Sbjct: 145 VVQ 147


>AT1G68800.1 | Symbols: BRC2, TCP12 | TCP domain protein 12 |
           chr1:25847306-25848471 REVERSE LENGTH=356
          Length = 356

 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 19/169 (11%)

Query: 114 KKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQELA 173
           K+DRHSKI T+QG RDRR+RLS +IARKFFDLQDML FDK S T+EWLF+KS+++I++L 
Sbjct: 112 KRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTSIKQLK 171

Query: 174 RXXXXXXXXXXXXXXXXXXXXLFGGGDNHNGTNSIRGRGNSKLKWTTQRDQDVCVLQNKK 233
                                  GG D H   +        KL+ + +R + +      K
Sbjct: 172 ERVAASEG---------------GGKDEHLQVDEKEKDETLKLRVSKRRTKTMESSFKTK 216

Query: 234 ESXXXXXXXXXXXTFYKM----LEDQRLPANTTQIMHQLRSSSPIQLLQ 278
           ES           T  KM     E     ++  Q   +++ ++ +QLL+
Sbjct: 217 ESRERARKRARERTMAKMKMRLFETSETISDPHQETREIKITNGVQLLE 265


>AT1G53230.1 | Symbols: TCP3 | TEOSINTE BRANCHED 1, cycloidea and
           PCF transcription factor 3 | chr1:19850260-19851435
           REVERSE LENGTH=391
          Length = 391

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 51/63 (80%)

Query: 112 TTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQE 171
           T +KDRHSK+ T++G RDRRVRLS+  A +F+D+QD L FD+PS  ++WL TK++SAI +
Sbjct: 47  TGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAIDD 106

Query: 172 LAR 174
           LA+
Sbjct: 107 LAQ 109


>AT3G15030.3 | Symbols: TCP4 | TCP family transcription factor 4 |
           chr3:5062308-5063570 FORWARD LENGTH=420
          Length = 420

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 49/62 (79%)

Query: 112 TTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQE 171
           T +KDRHSK+ T++G RDRRVRLS+  A +F+D+QD L FD+PS  ++WL  K++++I E
Sbjct: 43  TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDE 102

Query: 172 LA 173
           LA
Sbjct: 103 LA 104


>AT3G15030.2 | Symbols: TCP4 | TCP family transcription factor 4 |
           chr3:5062308-5063570 FORWARD LENGTH=420
          Length = 420

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 49/62 (79%)

Query: 112 TTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQE 171
           T +KDRHSK+ T++G RDRRVRLS+  A +F+D+QD L FD+PS  ++WL  K++++I E
Sbjct: 43  TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDE 102

Query: 172 LA 173
           LA
Sbjct: 103 LA 104


>AT3G15030.1 | Symbols: TCP4, MEE35 | TCP family transcription
           factor 4 | chr3:5062308-5063570 FORWARD LENGTH=420
          Length = 420

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 49/62 (79%)

Query: 112 TTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQE 171
           T +KDRHSK+ T++G RDRRVRLS+  A +F+D+QD L FD+PS  ++WL  K++++I E
Sbjct: 43  TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDE 102

Query: 172 LA 173
           LA
Sbjct: 103 LA 104


>AT2G31070.1 | Symbols: TCP10 | TCP domain protein 10 |
           chr2:13220984-13222069 REVERSE LENGTH=361
          Length = 361

 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 48/61 (78%)

Query: 112 TTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQE 171
           T +KDRHSK+ TS+G RDRRVRLS+  A +F+D+QD L +D+PS  ++WL  K+++AI +
Sbjct: 27  TGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDK 86

Query: 172 L 172
           L
Sbjct: 87  L 87


>AT3G18550.1 | Symbols: BRC1, TCP18, ATTCP18 | TCP family
           transcription factor  | chr3:6383769-6385604 FORWARD
           LENGTH=433
          Length = 433

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 48/61 (78%)

Query: 113 TKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQEL 172
           ++ DRHSKI T++G RDRR+RLS ++A++ F LQDML FDK S T+EWL T+++  I ++
Sbjct: 147 SRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKI 206

Query: 173 A 173
           A
Sbjct: 207 A 207


>AT3G18550.2 | Symbols: BRC1, TCP18, ATTCP18 | TCP family
           transcription factor  | chr3:6383769-6385604 FORWARD
           LENGTH=429
          Length = 429

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 48/61 (78%)

Query: 113 TKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQEL 172
           ++ DRHSKI T++G RDRR+RLS ++A++ F LQDML FDK S T+EWL T+++  I ++
Sbjct: 147 SRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKI 206

Query: 173 A 173
           A
Sbjct: 207 A 207


>AT4G18390.2 | Symbols: TCP2 | TEOSINTE BRANCHED 1, cycloidea and
           PCF transcription factor 2 | chr4:10163212-10164309
           REVERSE LENGTH=365
          Length = 365

 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 115 KDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQEL 172
           KDRHSK+ TS+G RDRRVRLS   A +F+DLQD L +D+PS  +EWL   +E +I EL
Sbjct: 43  KDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISEL 100


>AT4G18390.1 | Symbols: TCP2 | TEOSINTE BRANCHED 1, cycloidea and
           PCF transcription factor 2 | chr4:10163212-10164309
           REVERSE LENGTH=365
          Length = 365

 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 115 KDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQEL 172
           KDRHSK+ TS+G RDRRVRLS   A +F+DLQD L +D+PS  +EWL   +E +I EL
Sbjct: 43  KDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISEL 100


>AT1G30210.2 | Symbols: TCP24 | TEOSINTE BRANCHED 1, cycloidea, and
           PCF family 24 | chr1:10628754-10629728 REVERSE
           LENGTH=324
          Length = 324

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 115 KDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQEL 172
           KDRHSK+ TS+GLRDRR+RLS   A +F+DLQD L FD+PS  +EWL   +  +I +L
Sbjct: 51  KDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDL 108


>AT1G30210.1 | Symbols: TCP24, ATTCP24 | TEOSINTE BRANCHED 1,
           cycloidea, and PCF family 24 | chr1:10628754-10629728
           REVERSE LENGTH=324
          Length = 324

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 115 KDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQEL 172
           KDRHSK+ TS+GLRDRR+RLS   A +F+DLQD L FD+PS  +EWL   +  +I +L
Sbjct: 51  KDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDL 108


>AT3G02150.2 | Symbols: PTF1, TFPD | plastid transcription factor 1
           | chr3:391522-392589 FORWARD LENGTH=355
          Length = 355

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 115 KDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQEL 172
           KDRHSK+ T +GLRDRRVRLS   A + +DLQ+ L  D+PS  ++WL   ++  I EL
Sbjct: 75  KDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDEL 132


>AT3G02150.1 | Symbols: PTF1, TCP13, TFPD | plastid transcription
           factor 1 | chr3:391522-392450 FORWARD LENGTH=278
          Length = 278

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 115 KDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQEL 172
           KDRHSK+ T +GLRDRRVRLS   A + +DLQ+ L  D+PS  ++WL   ++  I EL
Sbjct: 75  KDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDEL 132


>AT5G60970.1 | Symbols: TCP5 | TEOSINTE BRANCHED 1, cycloidea and
           PCF transcription factor 5 | chr5:24535570-24536652
           REVERSE LENGTH=360
          Length = 360

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 115 KDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQEL 172
           KDRHSK+ T +GLRDRR+RLS   A + +DLQD L   +PS  ++WL   ++  + +L
Sbjct: 64  KDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKL 121


>AT5G08070.1 | Symbols: TCP17 | TCP domain protein 17 |
           chr5:2584885-2585613 FORWARD LENGTH=242
          Length = 242

 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 115 KDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQEL 172
           KDRHSK+ T +GLRDRR+RLS   A + +DLQ+ L   +PS  ++WL   +++ +  L
Sbjct: 34  KDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWLLEVAKNDVDLL 91