Miyakogusa Predicted Gene

Lj1g3v0096370.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0096370.1 Non Chatacterized Hit- tr|A3C4Z6|A3C4Z6_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,29.3,0.0000000003,seg,NULL,CUFF.25199.1
         (276 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05430.1 | Symbols:  | unknown protein; Has 31 Blast hits to ...    94   9e-20

>AT1G05430.1 | Symbols:  | unknown protein; Has 31 Blast hits to 31
           proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 31; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:1594227-1595731 REVERSE LENGTH=269
          Length = 269

 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 124/259 (47%), Gaps = 35/259 (13%)

Query: 4   ALFDLEQVLITK--RGKLSIEEARVIPSCKSNAVRDLTVGALAGGTAVWAATWKLSKPF- 60
           AL  L  VL +K  + K++ EE+R I SC   A+      +  GG   W  T KL KP  
Sbjct: 5   ALNQLFVVLASKPEQEKITPEESRAIVSCHFKALWTAGFASGVGGGLTWQVTKKLKKPKG 64

Query: 61  --RINLSAG--AGVFFGLWMLERSLY--SCVDHILTLDGTILQKELANIMVTKYHDKPSV 114
             R+ L+AG  A  F   W    S Y  S +DHIL+ D T +QKEL N++V     +   
Sbjct: 65  LERVALAAGVAASTFVVAWNWSSSKYAVSSLDHILSQDATRMQKELVNVLVRSNRGEAWR 124

Query: 115 MQLISKHFYSERLFDDSTSNTPKFRWRYRNFYSDNVVHGQTTHDPDSYDKSQGDSH---N 171
            QL+SKHFY E ++ D   + P+ RWR R  +++      +++D  +  KSQ + +   N
Sbjct: 125 WQLMSKHFYPESVYGDE-GDKPQMRWRRRTTFTEIA----SSYDDVNATKSQRNPNGLPN 179

Query: 172 DSYEKSQGDSLNDSSGKSKSKSENVTGSKKSNLETKQIFTKPGTDIMSEVDPLDCLFGYG 231
            S+ +  G S  D+S K+K   +N +G+                  M+E D LD +FG  
Sbjct: 180 PSHRRISGGS--DAS-KTKQTLQNSSGNSDGE--------------MAEEDVLDIVFGCS 222

Query: 232 GAPVEEIRGPNTSNKQSGT 250
            A  E I  P  S   S T
Sbjct: 223 EA-TESIPAPVISKLASKT 240