Miyakogusa Predicted Gene

Lj1g3v0084880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0084880.1 Non Chatacterized Hit- tr|I3S562|I3S562_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,45,1e-18,seg,NULL; coiled-coil,NULL; Translational machinery
components,NULL; STRUCTURAL CONSTITUENT OF RIBOS,CUFF.25193.1
         (346 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22450.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...   224   6e-59
AT1G08845.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    95   8e-20
AT1G08845.2 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    95   9e-20
AT3G20230.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    87   2e-17
AT5G27820.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    49   7e-06

>AT3G22450.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr3:7962443-7963378 FORWARD LENGTH=311
          Length = 311

 Score =  224 bits (572), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 128/261 (49%), Positives = 165/261 (63%), Gaps = 14/261 (5%)

Query: 71  SGFDIELVDRDAWGISSGVAQAWRAASEASSADKQATSEDQRQNEVEGE-LDFEELDNMR 129
           SG  IE VD D W +SS ++QAWR     ++ +   T +  R+  ++ E  D +E+DNMR
Sbjct: 45  SGCGIETVDDDVWHVSSSLSQAWRQFQADTAKNSPVTIQGVRETILDDEDPDHDEIDNMR 104

Query: 130 IRGNLFFKLERSSKEFEEYNLEFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTPKDQKV 189
           IRG+LFFKL+R SKEFEEYN +FH                               KD K 
Sbjct: 105 IRGDLFFKLDRGSKEFEEYNYDFHRKNQHKNAKKEQNQEEETK----------IKKDNKK 154

Query: 190 PKVRELTRSNSVIEPRMDETKDVSPLNKRQRNPTFNQLTGPYHEPFCLDIFISNASVRAC 249
               E  + N       D   +   + KR+R  TFNQLT P+H PFCLDI+IS  SVRAC
Sbjct: 155 EVRDEYKKRNDSFTGETDHPNEA--VKKRERTFTFNQLTAPFHYPFCLDIYISKESVRAC 212

Query: 250 IIHRVTSQVVAVAHSISKDIKFDLANSTKSKTTCAAVGAILAQRALADDIHDVIYTPRKG 309
           +IHRVTS+VV VAHSISKD+KFDL  S ++   CAAVGA+LAQR+L DDIHDVIYTPRKG
Sbjct: 213 VIHRVTSKVVTVAHSISKDMKFDLG-SRRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKG 271

Query: 310 NRVEGKLQIVLHSIMNNGINV 330
           +++EGKLQ+VL ++++NG+NV
Sbjct: 272 DKIEGKLQVVLQALIDNGVNV 292


>AT1G08845.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr1:2839855-2840955 FORWARD LENGTH=189
          Length = 189

 Score = 94.7 bits (234), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 75/119 (63%), Gaps = 5/119 (4%)

Query: 217 KRQRNP----TFNQLTGPYHEPFCLDIFISNASVRACIIHRVTSQVVAVAHSISKDIKFD 272
           K+ +NP    +F Q T  Y EPF LD+FIS   V A + HRVT + VAVA + SKD+K  
Sbjct: 68  KKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAV 127

Query: 273 LANSTKSKTTCAAVGAILAQRALADDIHDVIYTPRKGNRVEGKLQIVLHSIMNNGINVK 331
           L  S      C ++G IL++RA   D++   YTPR  ++ EGK++ V+ S+++NGI+VK
Sbjct: 128 L-RSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDVK 185


>AT1G08845.2 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr1:2838789-2840955 FORWARD LENGTH=234
          Length = 234

 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 75/119 (63%), Gaps = 5/119 (4%)

Query: 217 KRQRNP----TFNQLTGPYHEPFCLDIFISNASVRACIIHRVTSQVVAVAHSISKDIKFD 272
           K+ +NP    +F Q T  Y EPF LD+FIS   V A + HRVT + VAVA + SKD+K  
Sbjct: 113 KKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAV 172

Query: 273 LANSTKSKTTCAAVGAILAQRALADDIHDVIYTPRKGNRVEGKLQIVLHSIMNNGINVK 331
           L  S      C ++G IL++RA   D++   YTPR  ++ EGK++ V+ S+++NGI+VK
Sbjct: 173 L-RSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDVK 230


>AT3G20230.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr3:7055639-7056679 REVERSE LENGTH=187
          Length = 187

 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 72/112 (64%), Gaps = 1/112 (0%)

Query: 217 KRQRNPTFNQLTGPYHEPFCLDIFISNASVRACIIHRVTSQVVAVAHSISKDIKFDLANS 276
           KR    ++ Q T  Y  PF L++F S   + A ++HR TS+V++VA + ++DI+ ++ + 
Sbjct: 73  KRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSL 132

Query: 277 TKSKTTCAAVGAILAQRALADDIHDVIYTPRKGNRVEGKLQIVLHSIMNNGI 328
             ++  C  +G ++A+R++  D++ V Y PRKG R+EGKL IV+ +I  +GI
Sbjct: 133 VDNEA-CRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183


>AT5G27820.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr5:9860584-9860928 FORWARD LENGTH=114
          Length = 114

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)

Query: 231 YHEPFCLDIFISNASVRACIIHRVTSQVVAVAHSISKDIKFDLANSTKSKTTCAAVGAIL 290
           Y +P+ L +  +N  V A +IH  T+ V   A S  K ++ +  + T+     + +G IL
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALR-ETMDITRDVAAASKIGKIL 73

Query: 291 AQRALADDIHDVIYTPRKGNRVEGKLQIVLHSIMNNGINV 330
            +R L  DI  V    +K  R  GK++ V+ S+   G+ +
Sbjct: 74  GERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKL 113