Miyakogusa Predicted Gene

Lj1g3v0052580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0052580.1 tr|Q54WL8|Q54WL8_DICDI ENTH domain-containing
protein OS=Dictyostelium discoideum GN=pcf11 PE=4
SV=2,34.44,4e-18,seg,NULL; no description,RNA polymerase II, large
subunit, CTD; CTD_bind,RNA polymerase II-binding d,CUFF.25202.1
         (804 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04885.1 | Symbols: PCFS4 | PCF11P-similar protein 4 | chr4:2...   301   9e-82
AT1G66500.1 | Symbols:  | Pre-mRNA cleavage complex II | chr1:24...   155   1e-37
AT5G43620.1 | Symbols:  | Pre-mRNA cleavage complex II | chr5:17...   151   2e-36
AT2G36480.1 | Symbols:  | ENTH/VHS family protein | chr2:1530311...   139   6e-33
AT2G36480.2 | Symbols:  | ENTH/VHS family protein | chr2:1530256...   139   6e-33
AT2G36480.3 | Symbols:  | ENTH/VHS family protein | chr2:1530256...   139   6e-33
AT2G36485.1 | Symbols:  | ENTH/VHS family protein | chr2:1530705...    52   2e-06

>AT4G04885.1 | Symbols: PCFS4 | PCF11P-similar protein 4 |
           chr4:2472083-2475417 FORWARD LENGTH=808
          Length = 808

 Score =  301 bits (772), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 142/228 (62%), Positives = 168/228 (73%), Gaps = 11/228 (4%)

Query: 576 VSSQQPTVPYSNLINSLVAQGVFSWANPVPAQDSVGIEFNLDIPKVHHESAISALYGDLP 635
            S+Q P   +S LI SL+AQG+ S  N    Q  +G+EF+ D+ K+ +ESAISALYGDLP
Sbjct: 591 ASNQPPGGAFSGLIGSLMAQGLISLNNQPAGQGPLGLEFDADMLKIRNESAISALYGDLP 650

Query: 636 RQCRTCGLRFKCQDEHSNHMDWHVTKNRMSKNRKQKPSRKWFVSVRMWLSGAEALGTESA 695
           RQC TCGLRFKCQ+EHS HMDWHVTKNRMSKN KQ PSRKWFVS  MWLSGAEALG E+ 
Sbjct: 651 RQCTTCGLRFKCQEEHSKHMDWHVTKNRMSKNHKQNPSRKWFVSASMWLSGAEALGAEAV 710

Query: 696 PGFLRTDTVXXXXXXXXLAVPADEDQNTCALCLEPFGKFYSDETEDWMYRGAVYLNAPNG 755
           PGFL T+          +AVPADEDQ +CALC EPF  FYSDETE+WMY+GAVY+NAP  
Sbjct: 711 PGFLPTEPTTEKKDDEDMAVPADEDQTSCALCGEPFEDFYSDETEEWMYKGAVYMNAPEE 770

Query: 756 TTAGLNRSQLGPIIHAKCRSESSVAPFNDFALDEGGTSEEGSKRKRMR 803
           +T  +++SQLGPI+HAKCR ES+           GG  EEGS+RK+MR
Sbjct: 771 STTDMDKSQLGPIVHAKCRPESN-----------GGDMEEGSQRKKMR 807



 Score =  273 bits (699), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 171/402 (42%), Positives = 221/402 (54%), Gaps = 49/402 (12%)

Query: 15  TLVDRFKALLXXXX------XXXXXXASEEIVQIYELLLSELTCNLKPIITDLTIIAEQQ 68
           +L+DRFKALL                + +EIVQ+YE++L ELT N KPIITDLTIIA +Q
Sbjct: 35  SLLDRFKALLNQREDEFGGGEEVLPPSMDEIVQLYEVVLGELTFNSKPIITDLTIIAGEQ 94

Query: 69  REHAEGIADAICTRILEVHADQKLPSLYLLDSIVKNVGQEYVKYFSLRLPEVFCEAYRQV 128
           REH EGIA+AICTRILE   +QKLPSLYLLDSIVKN+G++Y +YFS RLPEVFC AYRQ 
Sbjct: 95  REHGEGIANAICTRILEAPVEQKLPSLYLLDSIVKNIGRDYGRYFSSRLPEVFCLAYRQA 154

Query: 129 QPHLHSAMRHLFGTWSKVFSAPVLRKIEAQLQFSRGVNNQPSNVNPLRTSESPRPTHGIH 188
            P LH +MRHLFGTWS VF  PVLRKI+ QLQ S   N      + +  SE  +PT GIH
Sbjct: 155 HPSLHPSMRHLFGTWSSVFPPPVLRKIDMQLQLSSAANQ-----SSVGASEPSQPTRGIH 209

Query: 189 VNPKYVGGERLDSTGTGGNTSFGLVANKIHQFXXXXXXXXXXXXXXXXDMPLSTYADEYP 248
           VNPKY+   RL+ +    N         I+                  D   S  +    
Sbjct: 210 VNPKYL--RRLEPSAAENNL------RGINSSARVYGQNSLGGYNDFEDQLESPSSLSST 261

Query: 249 ADNSTGRTIERESP-HHAVDYGVVKTLGREVELSEWQRKQFSGEGPKRFQTSKTTYSLIN 307
            D  T R+ +  +P + A +YG+ +   R+ E  EW+RK+  G+G              N
Sbjct: 262 PDGFTRRSNDGANPSNQAFNYGMGRATSRDDEHMEWRRKENLGQG--------------N 307

Query: 308 GQQRQSPRALIDAFGGDKR---------LGRNGIDKVLTTSWQNTEEEEFNWGDMSPKLA 358
             +R  PRALIDA+G D              NG+   + T WQNTEEEEF+W DMSP L 
Sbjct: 308 DHER--PRALIDAYGVDTSKHVTINKPIRDMNGMHSKMVTPWQNTEEEEFDWEDMSPTL- 364

Query: 359 EHNTNNGYLQSTT---GFTTGKPVIVGANAISSEQDTRKGWS 397
           + +    +L+S+    G    +P +   +    + D + G S
Sbjct: 365 DRSRAGEFLRSSVPALGSVRARPRVGNTSDFHLDSDIKNGVS 406


>AT1G66500.1 | Symbols:  | Pre-mRNA cleavage complex II |
           chr1:24811262-24812512 REVERSE LENGTH=416
          Length = 416

 Score =  155 bits (391), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/180 (44%), Positives = 102/180 (56%), Gaps = 24/180 (13%)

Query: 608 DSVGIEFNLDIP---KVHHESAISALYGDLPRQCRTCGLRFKCQDEHSNHMDWHVTKNRM 664
           DS+ +  + D P    V HES I +LY D+PRQC +CGLRFKCQ+EHS HMDWHV KNR 
Sbjct: 223 DSLPVGLSFDNPSSLNVRHESVIKSLYSDMPRQCSSCGLRFKCQEEHSKHMDWHVRKNRS 282

Query: 665 SKN-----RKQKPSRKWFVSVRMWL---SGAEALGTESAPGFLRTDTVXXXXXXXXLAVP 716
            K      ++ K SR W  S  +WL   +G E +   S  G ++            L VP
Sbjct: 283 VKTTTRLGQQPKKSRGWLASASLWLCAATGGETVEVASFGGEMQKKK-GKDEEPKQLMVP 341

Query: 717 ADEDQNTCALCLEPFGKFYSDETEDWMYRGAVYLNAPNGTTAGLNRSQLGPIIHAKCRSE 776
           ADEDQ  CALC+EPF +F+S E +DWMY+ AVYL            ++ G I+H KC  E
Sbjct: 342 ADEDQKNCALCVEPFEEFFSHEDDDWMYKDAVYL------------TKNGRIVHVKCMPE 389


>AT5G43620.1 | Symbols:  | Pre-mRNA cleavage complex II |
           chr5:17522653-17523885 FORWARD LENGTH=410
          Length = 410

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 99/181 (54%), Gaps = 25/181 (13%)

Query: 608 DSVGIEFNLDIP---KVHHESAISALYGDLPRQCRTCGLRFKCQDEHSNHMDWHVTKNRM 664
           DS+ +  + D P    V HES I +LY D+PRQC +CG+RFKCQ+EHS HMDWHV KNR 
Sbjct: 216 DSLPVGLSFDNPSSLNVRHESVIKSLYSDMPRQCTSCGVRFKCQEEHSKHMDWHVRKNRS 275

Query: 665 SKN-----RKQKPSRKWFVSVRMWLSGAEALGTESAPGF----LRTDTVXXXXXXXXLAV 715
            K      ++ K SR W  S  +WL      GT     F    ++            + V
Sbjct: 276 VKTTTRLGQQPKKSRGWLASASLWLCAPTGGGTVEVASFGGGEMQKKNEKDQVQKQHM-V 334

Query: 716 PADEDQNTCALCLEPFGKFYSDETEDWMYRGAVYLNAPNGTTAGLNRSQLGPIIHAKCRS 775
           PADEDQ  CALC+EPF +F+S E +DWMY+ AVYL            ++ G I+H KC  
Sbjct: 335 PADEDQKNCALCVEPFEEFFSHEADDWMYKDAVYL------------TKNGRIVHVKCMP 382

Query: 776 E 776
           E
Sbjct: 383 E 383


>AT2G36480.1 | Symbols:  | ENTH/VHS family protein |
           chr2:15303114-15306274 REVERSE LENGTH=830
          Length = 830

 Score =  139 bits (351), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 86/121 (71%), Gaps = 1/121 (0%)

Query: 84  LEVHADQKLPSLYLLDSIVKNVGQEYVKYFSLRLPEVFCEAYRQVQPHLHSAMRHLFGTW 143
           ++V +DQKLP+LYLLDSIVKN+G++Y+KYF  RLPEVF +AYRQV P +HS MRHLFGTW
Sbjct: 1   MQVPSDQKLPTLYLLDSIVKNIGRDYIKYFGARLPEVFVKAYRQVDPPMHSNMRHLFGTW 60

Query: 144 SKVFSAPVLRKIEAQLQFSRGVNNQPSNVNPLRTS-ESPRPTHGIHVNPKYVGGERLDST 202
             VF    L+ IE +L F+   +   + V+  R   +S RP H IHVNPKY+  +RL  +
Sbjct: 61  KGVFHPQTLQLIEKELGFNAKSDGSAAVVSTARAEPQSQRPPHSIHVNPKYLERQRLQQS 120

Query: 203 G 203
           G
Sbjct: 121 G 121



 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 9/173 (5%)

Query: 607 QDSVGIEFNLDIPKVHHESAISALYGDLPRQCRTCGLRFKCQDEHSNHMDWHVTKNRMSK 666
           +D +G++F  D  +  H S IS+L+ DLP  C +C +R K ++E   HM+ H  K ++  
Sbjct: 652 KDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHMELH-DKKKLEL 710

Query: 667 NRKQKPSRKWFVSVRMWLSGAEALGTESAPGFLRTDTVXXXXXXXXLAVPADEDQNTCAL 726
           +      R WF  V  W++   A   E  P +    +          AV ADE Q  C L
Sbjct: 711 SGTNSKCRVWFPKVDNWIA---AKAGELEPEYEEVLSEPESAIEDCQAVAADETQCACIL 767

Query: 727 CLEPFGKFYSDETEDWMYRGAVYLNAPNGTTAGLNRSQLGPIIHAKCRSESSV 779
           C E F  ++S E   WM++GA YL  P       N    GPI+H  C + SS+
Sbjct: 768 CGEVFEDYFSQEMAQWMFKGASYLTNPPA-----NSEASGPIVHTGCLTTSSL 815


>AT2G36480.2 | Symbols:  | ENTH/VHS family protein |
           chr2:15302567-15306274 REVERSE LENGTH=844
          Length = 844

 Score =  139 bits (351), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 86/121 (71%), Gaps = 1/121 (0%)

Query: 84  LEVHADQKLPSLYLLDSIVKNVGQEYVKYFSLRLPEVFCEAYRQVQPHLHSAMRHLFGTW 143
           ++V +DQKLP+LYLLDSIVKN+G++Y+KYF  RLPEVF +AYRQV P +HS MRHLFGTW
Sbjct: 1   MQVPSDQKLPTLYLLDSIVKNIGRDYIKYFGARLPEVFVKAYRQVDPPMHSNMRHLFGTW 60

Query: 144 SKVFSAPVLRKIEAQLQFSRGVNNQPSNVNPLRTS-ESPRPTHGIHVNPKYVGGERLDST 202
             VF    L+ IE +L F+   +   + V+  R   +S RP H IHVNPKY+  +RL  +
Sbjct: 61  KGVFHPQTLQLIEKELGFNAKSDGSAAVVSTARAEPQSQRPPHSIHVNPKYLERQRLQQS 120

Query: 203 G 203
           G
Sbjct: 121 G 121



 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 9/173 (5%)

Query: 607 QDSVGIEFNLDIPKVHHESAISALYGDLPRQCRTCGLRFKCQDEHSNHMDWHVTKNRMSK 666
           +D +G++F  D  +  H S IS+L+ DLP  C +C +R K ++E   HM+ H  K ++  
Sbjct: 652 KDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHMELH-DKKKLEL 710

Query: 667 NRKQKPSRKWFVSVRMWLSGAEALGTESAPGFLRTDTVXXXXXXXXLAVPADEDQNTCAL 726
           +      R WF  V  W++   A   E  P +    +          AV ADE Q  C L
Sbjct: 711 SGTNSKCRVWFPKVDNWIA---AKAGELEPEYEEVLSEPESAIEDCQAVAADETQCACIL 767

Query: 727 CLEPFGKFYSDETEDWMYRGAVYLNAPNGTTAGLNRSQLGPIIHAKCRSESSV 779
           C E F  ++S E   WM++GA YL  P       N    GPI+H  C + SS+
Sbjct: 768 CGEVFEDYFSQEMAQWMFKGASYLTNPPA-----NSEASGPIVHTGCLTTSSL 815


>AT2G36480.3 | Symbols:  | ENTH/VHS family protein |
           chr2:15302567-15306274 REVERSE LENGTH=886
          Length = 886

 Score =  139 bits (351), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 86/121 (71%), Gaps = 1/121 (0%)

Query: 84  LEVHADQKLPSLYLLDSIVKNVGQEYVKYFSLRLPEVFCEAYRQVQPHLHSAMRHLFGTW 143
           ++V +DQKLP+LYLLDSIVKN+G++Y+KYF  RLPEVF +AYRQV P +HS MRHLFGTW
Sbjct: 1   MQVPSDQKLPTLYLLDSIVKNIGRDYIKYFGARLPEVFVKAYRQVDPPMHSNMRHLFGTW 60

Query: 144 SKVFSAPVLRKIEAQLQFSRGVNNQPSNVNPLRTS-ESPRPTHGIHVNPKYVGGERLDST 202
             VF    L+ IE +L F+   +   + V+  R   +S RP H IHVNPKY+  +RL  +
Sbjct: 61  KGVFHPQTLQLIEKELGFNAKSDGSAAVVSTARAEPQSQRPPHSIHVNPKYLERQRLQQS 120

Query: 203 G 203
           G
Sbjct: 121 G 121



 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 9/173 (5%)

Query: 607 QDSVGIEFNLDIPKVHHESAISALYGDLPRQCRTCGLRFKCQDEHSNHMDWHVTKNRMSK 666
           +D +G++F  D  +  H S IS+L+ DLP  C +C +R K ++E   HM+ H  K ++  
Sbjct: 652 KDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHMELH-DKKKLEL 710

Query: 667 NRKQKPSRKWFVSVRMWLSGAEALGTESAPGFLRTDTVXXXXXXXXLAVPADEDQNTCAL 726
           +      R WF  V  W++   A   E  P +    +          AV ADE Q  C L
Sbjct: 711 SGTNSKCRVWFPKVDNWIA---AKAGELEPEYEEVLSEPESAIEDCQAVAADETQCACIL 767

Query: 727 CLEPFGKFYSDETEDWMYRGAVYLNAPNGTTAGLNRSQLGPIIHAKCRSESSV 779
           C E F  ++S E   WM++GA YL  P       N    GPI+H  C + SS+
Sbjct: 768 CGEVFEDYFSQEMAQWMFKGASYLTNPPA-----NSEASGPIVHTGCLTTSSL 815


>AT2G36485.1 | Symbols:  | ENTH/VHS family protein |
           chr2:15307059-15307535 REVERSE LENGTH=158
          Length = 158

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 35/56 (62%)

Query: 38  EIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAEGIADAICTRILEVHADQKLP 93
           E+V  Y+  L+ELT N KPIIT+LTIIA +    A+ +  AIC  ILEV+     P
Sbjct: 88  ELVNQYKSALAELTFNSKPIITNLTIIAGENVHAAKAVVTAICNNILEVNTQFSCP 143