Miyakogusa Predicted Gene

Lj1g3v0052310.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0052310.1 Non Chatacterized Hit- tr|B7FMX2|B7FMX2_MEDTR
Putative uncharacterized protein (Fragment)
OS=Medicag,81.48,2e-18,seg,NULL; coiled-coil,NULL,CUFF.25159.1
         (514 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33740.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    91   2e-18
AT4G33740.2 | Symbols:  | unknown protein; BEST Arabidopsis thal...    91   2e-18
AT4G33740.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    91   2e-18
AT4G37820.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    79   8e-15
AT2G22795.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    76   6e-14

>AT4G33740.3 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN:
          cellular_component unknown; BEST Arabidopsis thaliana
          protein match is: unknown protein (TAIR:AT4G37820.1);
          Has 138092 Blast hits to 73110 proteins in 2951
          species: Archae - 732; Bacteria - 17903; Metazoa -
          48520; Fungi - 16808; Plants - 7078; Viruses - 1044;
          Other Eukaryotes - 46007 (source: NCBI BLink). |
          chr4:16187384-16188802 FORWARD LENGTH=472
          Length = 472

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 3/87 (3%)

Query: 2  IKRSSSRNQR-SKGIKVKHVLQIILLLGVCFWLIYQVKRSHDKKKEFDQTDAKGSVVTQN 60
          +K++S+R+QR SKGIK KHVLQI +LLGVC WLIYQVK SHDKKKEF + D + S V  +
Sbjct: 1  MKKTSTRSQRGSKGIKGKHVLQICVLLGVCIWLIYQVKYSHDKKKEFYEKDVEKSTVLLS 60

Query: 61 AYQ--TPKIHARKFLPDEDKVNQDEKH 85
            +    K+  +  LP      ++EKH
Sbjct: 61 EVEDGVVKLGRKDLLPKNYNQKENEKH 87


>AT4G33740.2 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT4G37820.1); Has 138092 Blast hits to 73110
          proteins in 2951 species: Archae - 732; Bacteria -
          17903; Metazoa - 48520; Fungi - 16808; Plants - 7078;
          Viruses - 1044; Other Eukaryotes - 46007 (source: NCBI
          BLink). | chr4:16187384-16188802 FORWARD LENGTH=472
          Length = 472

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 3/87 (3%)

Query: 2  IKRSSSRNQR-SKGIKVKHVLQIILLLGVCFWLIYQVKRSHDKKKEFDQTDAKGSVVTQN 60
          +K++S+R+QR SKGIK KHVLQI +LLGVC WLIYQVK SHDKKKEF + D + S V  +
Sbjct: 1  MKKTSTRSQRGSKGIKGKHVLQICVLLGVCIWLIYQVKYSHDKKKEFYEKDVEKSTVLLS 60

Query: 61 AYQ--TPKIHARKFLPDEDKVNQDEKH 85
            +    K+  +  LP      ++EKH
Sbjct: 61 EVEDGVVKLGRKDLLPKNYNQKENEKH 87


>AT4G33740.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT4G37820.1); Has 138210 Blast hits to 73191
          proteins in 2959 species: Archae - 732; Bacteria -
          18006; Metazoa - 48521; Fungi - 16820; Plants - 7078;
          Viruses - 1046; Other Eukaryotes - 46007 (source: NCBI
          BLink). | chr4:16187384-16188802 FORWARD LENGTH=472
          Length = 472

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 3/87 (3%)

Query: 2  IKRSSSRNQR-SKGIKVKHVLQIILLLGVCFWLIYQVKRSHDKKKEFDQTDAKGSVVTQN 60
          +K++S+R+QR SKGIK KHVLQI +LLGVC WLIYQVK SHDKKKEF + D + S V  +
Sbjct: 1  MKKTSTRSQRGSKGIKGKHVLQICVLLGVCIWLIYQVKYSHDKKKEFYEKDVEKSTVLLS 60

Query: 61 AYQ--TPKIHARKFLPDEDKVNQDEKH 85
            +    K+  +  LP      ++EKH
Sbjct: 61 EVEDGVVKLGRKDLLPKNYNQKENEKH 87


>AT4G37820.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT2G22795.1); Has 433572 Blast hits to 177005
          proteins in 4263 species: Archae - 2016; Bacteria -
          67591; Metazoa - 157995; Fungi - 49745; Plants - 22011;
          Viruses - 2192; Other Eukaryotes - 132022 (source: NCBI
          BLink). | chr4:17785692-17787290 FORWARD LENGTH=532
          Length = 532

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 37/47 (78%)

Query: 4  RSSSRNQRSKGIKVKHVLQIILLLGVCFWLIYQVKRSHDKKKEFDQT 50
          R+  R QRSKGIKVKH +Q+ LLLGV  WLIYQ+K SH+KK EF+ T
Sbjct: 3  RTPRRGQRSKGIKVKHCIQLTLLLGVGIWLIYQMKHSHEKKAEFEGT 49


>AT2G22795.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT4G37820.1); Has 799854 Blast hits to 188815
          proteins in 4452 species: Archae - 4529; Bacteria -
          144236; Metazoa - 287749; Fungi - 87083; Plants -
          43826; Viruses - 3662; Other Eukaryotes - 228769
          (source: NCBI BLink). | chr2:9697380-9699584 REVERSE
          LENGTH=734
          Length = 734

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 37/50 (74%)

Query: 1  MIKRSSSRNQRSKGIKVKHVLQIILLLGVCFWLIYQVKRSHDKKKEFDQT 50
          M + S  R QRSKG KVKH +Q+ LLL V  WL+YQVK SH+KK +F+++
Sbjct: 1  MFRSSPRRGQRSKGFKVKHCIQLTLLLSVGIWLLYQVKHSHEKKAQFEES 50