Miyakogusa Predicted Gene

Lj1g3v0052160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0052160.1 Non Chatacterized Hit- tr|E5GBH0|E5GBH0_CUCME
Putative uncharacterized protein OS=Cucumis melo
subsp,40.53,3e-19,seg,NULL,CUFF.25146.1
         (202 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33800.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...    67   9e-12

>AT4G33800.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:16210404-16211307 REVERSE LENGTH=170
          Length = 170

 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 57/112 (50%), Gaps = 6/112 (5%)

Query: 68  DLSMVSDASSGPPHFSHHIEPNIAPDHTVSKLAKRSKKRQKVKQTQHLLQDPSFLDDTAS 127
           DLSM+SDASSGP + S            + K  KR KKR+  ++   L      LDDTAS
Sbjct: 59  DLSMISDASSGPRNISEEDSVKKINIVGLKKQCKREKKRRDYEKMNSL------LDDTAS 112

Query: 128 SPLFDNDFSMXXXXXXXXXXSTESVLELDYSQGFSATYFEERSSLHHHFGFL 179
           SPLF+    +           T     LDYSQGFSAT F+++++     G+L
Sbjct: 113 SPLFNFPHMLQKSVGGNKIEQTFPESTLDYSQGFSATQFQDKTAFQEQCGYL 164