Miyakogusa Predicted Gene

Lj1g3v0052100.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0052100.1 Non Chatacterized Hit- tr|I1LFQ0|I1LFQ0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20225
PE,84.89,0,UMUC,DNA-repair protein, UmuC-like, N-terminal;
IMS,DNA-repair protein, UmuC-like; no description,NU,CUFF.25137.1
         (250 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49980.1 | Symbols:  | DNA/RNA polymerases superfamily protei...   383   e-107
AT5G44750.1 | Symbols: REV1, ATREV1 | DNA-directed DNA polymeras...    83   2e-16
AT5G44750.2 | Symbols: REV1, ATREV1 | DNA-directed DNA polymeras...    83   2e-16
AT5G44740.2 | Symbols: POLH | Y-family DNA polymerase H | chr5:1...    64   8e-11

>AT1G49980.1 | Symbols:  | DNA/RNA polymerases superfamily protein |
           chr1:18508026-18512111 FORWARD LENGTH=671
          Length = 671

 Score =  383 bits (984), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 179/235 (76%), Positives = 203/235 (86%), Gaps = 2/235 (0%)

Query: 16  MEGSERESNDGGDRPHPWQSYHTVYTIAKAGMEGVDKEKVQRTVYEMSKGSKYFQNEERK 75
           M+  E  S +   RP  W+SY+TV+T AKAGMEGVDKEKVQR VYEMSKGSKYFQNEERK
Sbjct: 1   MDNGESSSTNNSSRP--WESYNTVFTNAKAGMEGVDKEKVQRVVYEMSKGSKYFQNEERK 58

Query: 76  EAFINHKIHNFRLNCAKLTPQDLSHYRKVADRRILELEASRDLSRIWLHVDMDAFYAAVE 135
           EA +  KI + R  CAKL+  DLS+Y+KV D+RILELEA+RDLSRIWLHVDMDAFYAAVE
Sbjct: 59  EALMKQKIEHMRDRCAKLSSLDLSNYQKVVDKRILELEATRDLSRIWLHVDMDAFYAAVE 118

Query: 136 TLSNPTLKGKPMAVGTISMISTANYEARKFGVRSAMPGFIARKLCPQLIFVPTDFNKYTH 195
           TLS+P++KGKPMAVG +SMISTANYEARKFGVR+AMPGFIARKLCP LIFVP DF KYTH
Sbjct: 119 TLSDPSIKGKPMAVGGLSMISTANYEARKFGVRAAMPGFIARKLCPDLIFVPVDFTKYTH 178

Query: 196 YSDLTRKVFRRYDPNFIAGSLDEAYLDITQVCKERNVKSEQIAQELRASVYEETG 250
           YSDLTRKVFR YDP+FIAGSLDEAYLDIT+VC+ER +   +IA+ELR+SVY ETG
Sbjct: 179 YSDLTRKVFRNYDPHFIAGSLDEAYLDITEVCRERGLSGGEIAEELRSSVYSETG 233


>AT5G44750.1 | Symbols: REV1, ATREV1 | DNA-directed DNA polymerases
           | chr5:18052669-18059581 FORWARD LENGTH=1101
          Length = 1101

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 11/135 (8%)

Query: 123 LHVDMDAFYAAVETLSNPTLKGKPMAV-------GTISMISTANYEARKFGVRSAMPGFI 175
           +H+D+D F+ +V   +   L  KP+AV       GT + IS+ANY AR +GV++ M    
Sbjct: 376 IHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGT-AEISSANYPARAYGVKAGMFVRH 434

Query: 176 ARKLCPQLIFVPTDFNKYTHYSDLTRKVFRRYDPNFIAGSLDEAYLDITQVCKERNVKSE 235
           A+ LCPQL+ VP +F  Y   +D    +  R+     A S DEA+LD++ +    +V++E
Sbjct: 435 AKDLCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSDL---SDVETE 491

Query: 236 QIAQELRASVYEETG 250
            +A  +R  + E TG
Sbjct: 492 VLASTIRNEILETTG 506


>AT5G44750.2 | Symbols: REV1, ATREV1 | DNA-directed DNA polymerases
           | chr5:18052669-18059581 FORWARD LENGTH=1105
          Length = 1105

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 11/135 (8%)

Query: 123 LHVDMDAFYAAVETLSNPTLKGKPMAV-------GTISMISTANYEARKFGVRSAMPGFI 175
           +H+D+D F+ +V   +   L  KP+AV       GT + IS+ANY AR +GV++ M    
Sbjct: 376 IHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGT-AEISSANYPARAYGVKAGMFVRH 434

Query: 176 ARKLCPQLIFVPTDFNKYTHYSDLTRKVFRRYDPNFIAGSLDEAYLDITQVCKERNVKSE 235
           A+ LCPQL+ VP +F  Y   +D    +  R+     A S DEA+LD++ +    +V++E
Sbjct: 435 AKDLCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSDL---SDVETE 491

Query: 236 QIAQELRASVYEETG 250
            +A  +R  + E TG
Sbjct: 492 VLASTIRNEILETTG 506


>AT5G44740.2 | Symbols: POLH | Y-family DNA polymerase H |
           chr5:18047903-18051779 REVERSE LENGTH=672
          Length = 672

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 58/121 (47%), Gaps = 19/121 (15%)

Query: 119 SRIWLHVDMDAFYAAVETLSNPTLKGKPMAV--------GTISMISTANYEARKFGVRSA 170
           +R+  HVDMD FY  VE    P L+G P AV        G +  +S   YEARK GV+ +
Sbjct: 11  ARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVS---YEARKCGVKRS 67

Query: 171 MPGFIARKLCP--QLIFVPT-----DFNKYTHYSDLTRKVFRRYDPNFIAGSLDEAYLDI 223
           M G  A+  CP  QL+ VP      D N Y         +  +      A S+DE YLD+
Sbjct: 68  MRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKCERA-SIDEVYLDL 126

Query: 224 T 224
           T
Sbjct: 127 T 127