Miyakogusa Predicted Gene

Lj1g3v0052050.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0052050.1 Non Chatacterized Hit- tr|Q01DM7|Q01DM7_OSTTA
Putative aminoacyl-t-RNA synthetase (ISS) (Fragment)
O,41.89,4e-19,TRNASYNTHGB,Glycine-tRNA ligase, beta subunit;
tRNA_synt_2f,Glycine-tRNA ligase, beta subunit; SUBFA,CUFF.25130.1
         (155 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48110.1 | Symbols: EDD1, EDD | glycine-tRNA ligases | chr3:1...   199   7e-52

>AT3G48110.1 | Symbols: EDD1, EDD | glycine-tRNA ligases |
           chr3:17763111-17770964 FORWARD LENGTH=1067
          Length = 1067

 Score =  199 bits (505), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 102/155 (65%), Positives = 124/155 (80%)

Query: 1   MRSLARQCAQLWLKTREMLGFPLGLISEPDQIVLPKEVLEAACEKVHDHSRAFVLEIGTE 60
           MRSLARQCAQLWL TRE LG PLG+ SEP   V  +  LE   EKV +  R+F++EIGTE
Sbjct: 334 MRSLARQCAQLWLATRESLGHPLGVASEPVPPVCHRAALEKVAEKVSEDPRSFIIEIGTE 393

Query: 61  ELPPHDVVDASKQLKDLMLQLLEQQRLKHGEVQVFGTPRRLVVAVENLFTKQTEKEVEIR 120
           E+PP DV++AS+QL+ L+L+LLE QRL+HG V+ FGTPRRLVV V+ + +KQ E+EVE+R
Sbjct: 394 EMPPQDVINASEQLRVLVLELLENQRLRHGAVKAFGTPRRLVVLVDAMSSKQLEEEVEVR 453

Query: 121 GPPVSKAFDHEGNPTKAIEGFSRRYSVPLDLVYRK 155
           GPP SKAFD EGNPTKA EGFSRRY VPL+ +YRK
Sbjct: 454 GPPASKAFDDEGNPTKAAEGFSRRYGVPLEKLYRK 488