Miyakogusa Predicted Gene

Lj1g3v0051020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0051020.1 Non Chatacterized Hit- tr|G4LW35|G4LW35_SCHMA
Histone deacetylase,putative OS=Schistosoma mansoni
GN,44.23,5e-19,Ubiquitin Carboxyl-terminal Hydrolase-like z,Zinc
finger, UBP-type; seg,NULL; ZF_UBP,Zinc finger, UB,CUFF.25127.1
         (149 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G14830.2 | Symbols:  | Regulator of Vps4 activity in the MVB ...   181   2e-46
AT2G14830.1 | Symbols:  | Regulator of Vps4 activity in the MVB ...    54   3e-08

>AT2G14830.2 | Symbols:  | Regulator of Vps4 activity in the MVB
           pathway protein | chr2:6362524-6363893 FORWARD
           LENGTH=146
          Length = 146

 Score =  181 bits (459), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 82/116 (70%), Positives = 98/116 (84%)

Query: 20  GSESGWVDARTCCDHLASLSLDLTHIPIPNTPCNRCQHPTENWLCLSCKDVLCSRFVNKH 79
           G+ SGWV+AR  CDHL +LS DL H+P P+TPC+RCQ+P ENWLCL CK+VLCSRFVN+H
Sbjct: 28  GAGSGWVEARKTCDHLNTLSPDLLHLPTPDTPCSRCQNPVENWLCLCCKEVLCSRFVNRH 87

Query: 80  MLHHFQDTNHSVALSFSDLSVWCFSCDAYLDAQLIAQLRPVYQLAYLLKFGEPPPL 135
           ML H Q T H +ALS+SDLSVWCF C+AYLDAQ+I QLRP++Q AY+LKFGE PPL
Sbjct: 88  MLMHHQQTGHCLALSYSDLSVWCFCCEAYLDAQIILQLRPIHQAAYILKFGEAPPL 143


>AT2G14830.1 | Symbols:  | Regulator of Vps4 activity in the MVB
          pathway protein | chr2:6362524-6365818 FORWARD
          LENGTH=454
          Length = 454

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 28/35 (80%)

Query: 20 GSESGWVDARTCCDHLASLSLDLTHIPIPNTPCNR 54
          G+ SGWV+AR  CDHL +LS DL H+P P+TPC+R
Sbjct: 28 GAGSGWVEARKTCDHLNTLSPDLLHLPTPDTPCSR 62