Miyakogusa Predicted Gene

Lj1g3v0050930.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0050930.1 Non Chatacterized Hit- tr|J3LT23|J3LT23_ORYBR
Uncharacterized protein (Fragment) OS=Oryza brachyanth,56.96,3e-19,no
description,NULL; SWIB/MDM2 domain,SWIB/MDM2 domain; SWIB,SWIB/MDM2
domain; SWI complex, BAF60b d,CUFF.25123.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G14880.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...   145   8e-36
AT4G34290.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...   129   6e-31
AT1G31760.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    97   2e-21
AT3G03590.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    95   1e-20
AT2G35605.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    94   2e-20
AT4G26810.2 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    73   6e-14
AT4G26810.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    73   6e-14
AT4G22360.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    72   1e-13
AT1G49520.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    72   1e-13
AT3G19080.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    70   4e-13
AT3G48600.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    58   2e-09
AT3G48600.2 | Symbols:  | SWIB complex BAF60b domain-containing ...    58   2e-09
AT2G16485.1 | Symbols:  | nucleic acid binding;zinc ion binding;...    47   4e-06

>AT2G14880.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr2:6393686-6394841 REVERSE LENGTH=141
          Length = 141

 Score =  145 bits (366), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 85/111 (76%), Gaps = 1/111 (0%)

Query: 22  FALPPPPTLRMVRPVVTSATVSQPSAAGNKI-RGIMKPRKISPEMQSICGVPEISRTQAL 80
           FA  P   LR+VR V ++   S+P+A   ++ RGIMKPR +SPEMQ I  +PEI+RTQAL
Sbjct: 31  FASHPAAKLRLVRAVTSATESSEPTATNKRVPRGIMKPRPVSPEMQDIVELPEIARTQAL 90

Query: 81  KHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHFL 131
           K IWAYIKE++LQDP+NK+ I CDEKLKK+F G+D VG LEIA LI PHFL
Sbjct: 91  KRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHFL 141


>AT4G34290.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr4:16410883-16412122 FORWARD LENGTH=144
          Length = 144

 Score =  129 bits (324), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 77/108 (71%), Gaps = 3/108 (2%)

Query: 27  PPTLRMVRPVVTSATVSQPSAAGNKIR---GIMKPRKISPEMQSICGVPEISRTQALKHI 83
           P  LRMVR V ++A  S       K R   GIMKPR +S  MQ + GVPEI RTQALK I
Sbjct: 37  PTNLRMVRAVTSAAAASSDPTTTTKTREPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRI 96

Query: 84  WAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHFL 131
           WAYIKE++LQDP+NK+ I CDEKLKK+F GK+ VG LEIA LI PHFL
Sbjct: 97  WAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPHFL 144


>AT1G31760.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr1:11372602-11373414 REVERSE LENGTH=112
          Length = 112

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 1/92 (1%)

Query: 39  SATVSQPSAAGNKIRGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENK 98
           +ATV   + AG   +GI K R +S ++ S  G  E++R  ALK +W Y+K +NLQ+P NK
Sbjct: 18  AATVEAVTVAGEG-KGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANK 76

Query: 99  KLIRCDEKLKKVFAGKDEVGMLEIAGLISPHF 130
           K I CD+KLK +F GKD+VG+ EI  L+SPHF
Sbjct: 77  KEIHCDDKLKTIFDGKDKVGITEIMKLLSPHF 108


>AT3G03590.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr3:865341-866669 REVERSE LENGTH=143
          Length = 143

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 55/79 (69%)

Query: 54  GIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAG 113
           GI K   +SP +    G  E SRT A+K IW YIK ++LQ+P +K+ I CDE LK +F G
Sbjct: 63  GIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEG 122

Query: 114 KDEVGMLEIAGLISPHFLK 132
           KD+VG LEI+ L+SPHF+K
Sbjct: 123 KDKVGFLEISKLLSPHFVK 141


>AT2G35605.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr2:14946161-14947027 FORWARD LENGTH=109
          Length = 109

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 63/97 (64%)

Query: 34  RPVVTSATVSQPSAAGNKIRGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQ 93
           R ++  A  S  +  G +  GI+K   +S  + +  G  E+SRT A+K IW YIK NNLQ
Sbjct: 9   RVLMAKAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQ 68

Query: 94  DPENKKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHF 130
           +P NK+ I CDE+LK +F+GKD VG LEI+ L+S HF
Sbjct: 69  NPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHF 105


>AT4G26810.2 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr4:13492247-13492649 REVERSE LENGTH=106
          Length = 106

 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 40  ATVSQPSAAGNKIRGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKK 99
           A    P   GN I  +  P      +++  G  +ISR      +W+YIK NNLQDP+NK 
Sbjct: 9   AITDNPKKLGNLIDLVNLP----STLRNFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKN 64

Query: 100 LIRCDEKLKKVFAGKDEVGMLEIAGLISPHF 130
           ++ CDEKLK +  GK  V ++++  LI  HF
Sbjct: 65  VVICDEKLKSILLGKQRVELVDLPSLIKLHF 95


>AT4G26810.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr4:13492247-13492649 REVERSE LENGTH=106
          Length = 106

 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 40  ATVSQPSAAGNKIRGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKK 99
           A    P   GN I  +  P      +++  G  +ISR      +W+YIK NNLQDP+NK 
Sbjct: 9   AITDNPKKLGNLIDLVNLP----STLRNFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKN 64

Query: 100 LIRCDEKLKKVFAGKDEVGMLEIAGLISPHF 130
           ++ CDEKLK +  GK  V ++++  LI  HF
Sbjct: 65  VVICDEKLKSILLGKQRVELVDLPSLIKLHF 95


>AT4G22360.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr4:11807811-11809660 FORWARD LENGTH=385
          Length = 385

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 1/78 (1%)

Query: 54  GIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAG 113
           G+ K  ++SPE++ + G P + RT+ ++ +WAYI++NNLQDP NK+ I CD+ L+ VF  
Sbjct: 196 GLNKVCRVSPELEVVVGEPALPRTEIVRQLWAYIRKNNLQDPSNKRKIICDDALRVVFE- 254

Query: 114 KDEVGMLEIAGLISPHFL 131
            D   M ++  L++ H L
Sbjct: 255 TDCTDMFKMNKLLAKHIL 272



 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 70  GVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGMLEIAGLISPH 129
           G  E++  + ++ +W YIK NNL+DP N   I+CDEKL+ +  G + +  + I  ++  H
Sbjct: 322 GETEMADEEIIRRVWEYIKLNNLEDPVNPMAIQCDEKLRDLL-GCESISAVGINEMLRRH 380

Query: 130 FLK 132
             K
Sbjct: 381 MYK 383


>AT1G49520.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr1:18329736-18331691 FORWARD LENGTH=372
          Length = 372

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 54  GIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAG 113
           G  K   +SPE+Q+  G P+++RT+ +K +W YIKENNLQDP +K+ I CDE L+ +F  
Sbjct: 250 GFTKVCSLSPELQAFTGTPQLARTEVVKMLWKYIKENNLQDPSDKRTIICDESLRSLFPV 309

Query: 114 KDEVGMLEIAGLISPH 129
            + + M ++   ++ H
Sbjct: 310 -ESINMFQMNKQLAKH 324



 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 45  PSAAGNKIRGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCD 104
           P  A  +  G  K  ++SP+++   G  +++RT+ +K +WAYI+E++LQDP N++ I CD
Sbjct: 92  PVKAKKRGGGFNKICQLSPQLEKFLGTSQLARTEVVKKMWAYIREHDLQDPTNRRNILCD 151

Query: 105 EKLKKVFAGKDEVGMLEIAGLISPH 129
           E L  +F  K  + M ++   ++ H
Sbjct: 152 ESLHSLFRVK-TINMFQMNKALAKH 175


>AT3G19080.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr3:6596082-6598667 FORWARD LENGTH=462
          Length = 462

 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 3/89 (3%)

Query: 41  TVSQPSAAGNKIRGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKL 100
           +V +P   G    G  K   +SPE+Q+  GV E++RT+ +K +W YIKENNLQDP +K+ 
Sbjct: 252 SVEKPKRKGGG--GFAKVCSLSPELQAFTGVTELARTEVVKLLWKYIKENNLQDPNDKRS 309

Query: 101 IRCDEKLKKVFAGKDEVGMLEIAGLISPH 129
           I CDE  + +F   + + M ++   ++ H
Sbjct: 310 IICDESFRSLFP-VESINMFQMNKQLTKH 337



 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 44  QPSAAGNKIRGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRC 103
           +P  A  +  GI K  ++SP+++ + G  ++ RT+ +K +WAYI+E +LQDP++++ I C
Sbjct: 105 RPVKAKKRGGGITKVSQLSPQLEKVVGASQLGRTEVVKKMWAYIREKDLQDPKDRRKIVC 164

Query: 104 DEKLKKVFAGKDEVGMLEIAGLISPH 129
           DE L  +F  K  + M ++   ++ H
Sbjct: 165 DELLHSLFRVK-TINMFQMNKALTKH 189



 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 7/66 (10%)

Query: 70  GVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGMLE---IAGLI 126
           G   +SR   +K +W YI  N+LQDP +K+ + CDEKLK++F    EV   E   ++ L+
Sbjct: 398 GENSLSRADVVKRLWEYINHNDLQDPSDKRRVICDEKLKELF----EVDSFEDTSVSKLL 453

Query: 127 SPHFLK 132
           + HF+K
Sbjct: 454 TNHFIK 459


>AT3G48600.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr3:18010289-18011363 REVERSE LENGTH=183
          Length = 183

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 37  VTSATVSQPSAAGNKIRGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPE 96
           VT+AT +   A  ++  GI K   +S  +    G  E+S + A++ +  Y  ++NL +PE
Sbjct: 19  VTNATAT--GAGVDRRGGIHKIFPVSESLARFVGQSEVSFSTAMEKVEQYTDDHNLWNPE 76

Query: 97  NKKLIRCDEKLKKVFAGKDE-VGMLEIAGLISPHF 130
           N + I CD+ LK +F G+D+ VG+ E+  L+  HF
Sbjct: 77  NIEEILCDDNLKTIFDGQDKVVGVREMTELLLRHF 111


>AT3G48600.2 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr3:18010168-18011363 REVERSE LENGTH=228
          Length = 228

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 3/100 (3%)

Query: 32  MVRPVVTSATVSQPSAAGNKIRGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENN 91
           ++   VT+AT +   A  ++  GI K   +S  +    G  E+S + A++ +  Y  ++N
Sbjct: 14  LMAKAVTNATAT--GAGVDRRGGIHKIFPVSESLARFVGQSEVSFSTAMEKVEQYTDDHN 71

Query: 92  LQDPENKKLIRCDEKLKKVFAGKDE-VGMLEIAGLISPHF 130
           L +PEN + I CD+ LK +F G+D+ VG+ E+  L+  HF
Sbjct: 72  LWNPENIEEILCDDNLKTIFDGQDKVVGVREMTELLLRHF 111


>AT2G16485.1 | Symbols:  | nucleic acid binding;zinc ion binding;DNA
           binding | chr2:7137269-7145222 REVERSE LENGTH=1773
          Length = 1773

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 85  AYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHFLK 132
           AYIK  NL+DP  K  + CD +L+ +F GK  VG  E+  L+  HFLK
Sbjct: 838 AYIKRYNLRDPRRKSQVICDSRLQNLF-GKSHVGHFEMLNLLDSHFLK 884