Miyakogusa Predicted Gene
- Lj1g3v0037710.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0037710.1 Non Chatacterized Hit- tr|I1JB03|I1JB03_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,74.06,0,PseudoU_synth_2,Pseudouridine synthase,
RsuA/RluB/C/D/E/F; Pseudouridine synthase,Pseudouridine
synt,CUFF.25181.1
(429 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19440.1 | Symbols: | Pseudouridine synthase family protein ... 448 e-126
AT1G78910.1 | Symbols: | Pseudouridine synthase family protein ... 283 2e-76
AT1G76050.2 | Symbols: | Pseudouridine synthase family protein ... 65 1e-10
AT3G52260.2 | Symbols: | Pseudouridine synthase family protein ... 61 1e-09
AT5G51140.1 | Symbols: | Pseudouridine synthase family protein ... 55 7e-08
AT5G51140.2 | Symbols: | Pseudouridine synthase family protein ... 55 8e-08
AT3G52260.3 | Symbols: | Pseudouridine synthase family protein ... 54 2e-07
AT3G52260.1 | Symbols: | Pseudouridine synthase family protein ... 53 3e-07
AT4G21770.1 | Symbols: | Pseudouridine synthase family protein ... 51 1e-06
>AT3G19440.1 | Symbols: | Pseudouridine synthase family protein |
chr3:6740778-6743132 FORWARD LENGTH=477
Length = 477
Score = 448 bits (1152), Expect = e-126, Method: Compositional matrix adjust.
Identities = 244/438 (55%), Positives = 306/438 (69%), Gaps = 35/438 (7%)
Query: 18 SRHFSATSEQDAKAKWHTLPPVTATVKG---------QGNQVSSSTS---TTALKWVLRC 65
+R +S T D++ KW TLPP + T+ G G+ V SST TTAL+W+LRC
Sbjct: 40 TRSYSTTQTDDSRGKWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRC 99
Query: 66 CPNLPRTLVHKLFRLRQVRVA---------IQDNRLKRVTAKDTLNSGDCIVLPHSVK-- 114
P+LPRTLV KLFRLRQVR +Q ++LKRV AK++LN GD I LP SV
Sbjct: 100 RPDLPRTLVQKLFRLRQVRREMSMSVDGDELQRSQLKRVAAKESLNVGDRIYLPLSVDND 159
Query: 115 --EIPIPKQQQLECHTTAKEISFIRSLVIYKDPAILVLNKPPGMPVQGGIDIKRSLDVVA 172
+ P K++ +C + +E F+ SLV+YKDPAI+VLNKP G+ VQGG IK S+D +A
Sbjct: 160 TPQTPPAKKESFQC--SDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELA 217
Query: 173 ASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRV- 231
ASCLK++ SE PRLVHRLDRDCSG+LV+ RTQT+ATVLHSIFREKT+ AS G + V
Sbjct: 218 ASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASA-YGVKKNVK 276
Query: 232 -LQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVIG 290
L+RKY ALVIGCP R RG ++A L KVVVD+GKS+RIT+ DN L+S+QHAITEYRVI
Sbjct: 277 SLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIE 336
Query: 291 SSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDXXXXXXXXX 350
SS HGYTWLEL PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH+ F
Sbjct: 337 SSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPF-----VSSEN 391
Query: 351 XXXXXXTLPFGLNLNKGSINEKQPRLHLHCKQIVLPDISQALKHVQSDSSYDLSQVKALE 410
+ PFGL+L+ G ++ KQP LHLH KQI LP+ISQ L+ +Q S D+S + +L+
Sbjct: 392 NPTKQSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLK 451
Query: 411 LVAAMPPYMRRSWDVMNS 428
A +P +M+ S++++ S
Sbjct: 452 FDAPLPSHMQLSFNLLKS 469
>AT1G78910.1 | Symbols: | Pseudouridine synthase family protein |
chr1:29665269-29667557 FORWARD LENGTH=478
Length = 478
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 147/349 (42%), Positives = 217/349 (62%), Gaps = 14/349 (4%)
Query: 92 LKRVTAKDTLNSGDCIVLPHSVKEIPIPKQQQL----ECHTTAKEISFIRSLVIYKDPAI 147
++++ + + GD I LP S+ E+ I K+ + A EI++++ LV +KD AI
Sbjct: 129 MRKIKHNEVMQIGDKIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQRLVRFKDSAI 188
Query: 148 LVLNKPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSA 207
+VLNKPP +PV+G + I S+D +AA+ L + E PRLVHRLDR+ SG+LVMGRT+ S
Sbjct: 189 IVLNKPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLLVMGRTKESI 248
Query: 208 TVLHSIFREKT--SSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKS 265
LHS+F + +S+ + ++Y ALVIG P+ GL++A L KV++D+GK+
Sbjct: 249 DYLHSVFSDYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKT 308
Query: 266 DRITIVDNSSLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVG 325
DR+ + S +SQ AITEY+V+G +G +W+EL P+T RKHQLRVHCAE LGTPIVG
Sbjct: 309 DRVVLAQGSGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCAEALGTPIVG 368
Query: 326 DYKYGWQAHRKWSHFDXXXXXXXXXXXXXXXTLPFGLNLNKGSINEKQPRLHLHCKQIVL 385
DYKYGW H++W P GL++ KGS+ K P LHLHC+++VL
Sbjct: 369 DYKYGWFVHKRWKQMPQVDIEPTTGKPYKLRR-PEGLDVQKGSVLSKVPLLHLHCREMVL 427
Query: 386 PDISQALKHVQSDSSYD------LSQVKALELVAAMPPYMRRSWDVMNS 428
P+I++ L HV + + + + L VA+MP +M+ SW++M+S
Sbjct: 428 PNIAKFL-HVMNQQETEPLHTGIIDKPDLLRFVASMPSHMKISWNLMSS 475
>AT1G76050.2 | Symbols: | Pseudouridine synthase family protein |
chr1:28540858-28542826 FORWARD LENGTH=430
Length = 430
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 52/226 (23%)
Query: 140 VIYKDPAILVLNKP--------PGMP---VQGGIDIKRSLDVV----------------- 171
++Y+D +LV+NKP PG P + GI SL V
Sbjct: 150 IVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPCVDYSNSEEDDDSDEETFS 209
Query: 172 -----AASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLG 226
S Y S P +VHRLD+ +G+LV+ + + S L F+ T
Sbjct: 210 DDEEMTTSPSSYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHT-------- 261
Query: 227 TENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLS-SQHAITE 285
++R Y +L G P P+G + +G+ D+ R+ + ++HA +
Sbjct: 262 -----IERVYVSLTTGVPSPPQGRIEIPIGR---DSSNRIRMAAIPGGVRGGRARHAASR 313
Query: 286 YRVIGSSSHGYTWL-ELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 330
Y+VI + + G + L E TGR HQ+R H A+ +G P++GD YG
Sbjct: 314 YKVIETFAGGGSALVEWRLETGRTHQIRAH-AKYMGVPLLGDEVYG 358
>AT3G52260.2 | Symbols: | Pseudouridine synthase family protein |
chr3:19383452-19386440 REVERSE LENGTH=369
Length = 369
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 120/296 (40%), Gaps = 45/296 (15%)
Query: 140 VIYKDPAILVLNKPPGMPV-QGGIDIKRSLDVVAASCLKYE-------YSEPPRLVHRLD 191
V+Y+D ++ LNKP G+ V GG+ +R++ C S P VHRL
Sbjct: 99 VLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLG 158
Query: 192 RDCSGILVMGRTQTSATVLHSIFREKTS-SASDDLGTE---NRVLQRKYRALVIGCPRRP 247
R SGIL+ +T+ + T L + F E TS S +L E R L + YRAL G
Sbjct: 159 RGTSGILLCAKTKLAKTKLAAYFAEGTSLVGSGNLDQECGTGRKLSKIYRALADGIVEED 218
Query: 248 RGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVIGSSSHGYTWLELSPLTGR 307
++ +G VV G + + + + R + +++ +GR
Sbjct: 219 EVVIKQPIG-VVRYPGVAQGLYVASPEGKPAFSKVFVLER---DREKNCSLVKVEIQSGR 274
Query: 308 KHQLRVHCAEVLGTPIVGDYKYGWQAHRKWSHFDXXXXXXXXXXXXXXXTLPFGLNLNKG 367
HQ+R+H A +G P+VGD Y K D F +
Sbjct: 275 PHQIRIHLA-YMGHPLVGDPLYVAGGQPKCFDPDLVDDAAA-----------FAEDGGYR 322
Query: 368 SINEKQP---RLHLHCKQIVLPDISQALKHVQSDSSYDLSQVKALELVAAMPPYMR 420
N+ P HLH Q+ LP++ L+ K +++VA +PP ++
Sbjct: 323 RPNQAVPGDCGYHLHAHQVELPNL--------------LNTHKVVKIVAPLPPILQ 364
>AT5G51140.1 | Symbols: | Pseudouridine synthase family protein |
chr5:20784277-20786793 REVERSE LENGTH=395
Length = 395
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 28/197 (14%)
Query: 139 LVIYKDPAILVLNKPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRL-VHRLDRDCSGI 197
++++++P ++ + KP +PV +++ V L E+ +HRLDR SG+
Sbjct: 137 VILHQEPDVVTVCKPASVPVHPCGQYRKNTIV---GILDAEHDLGTLFPIHRLDRLVSGL 193
Query: 198 LVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 257
L++ RT A FR++ E +++++Y A VIG +V A++
Sbjct: 194 LIIARTAAKA----DFFRQQ---------IEGGMVKKRYIAKVIGVFPEDEMIVDANINY 240
Query: 258 VVVDNGKSDRITIVDNSS-----LLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLR 312
NG R T D +S + + A T++ I ++ ++ + P+TGR HQ+R
Sbjct: 241 ----NGSEGRSTAEDANSSGDDKKVKGKPACTKFTRIDTNG-THSLVSCEPVTGRTHQIR 295
Query: 313 VHCAEVLGTPIVGDYKY 329
VH + G PI D Y
Sbjct: 296 VHL-QYTGHPIANDPLY 311
>AT5G51140.2 | Symbols: | Pseudouridine synthase family protein |
chr5:20784103-20786793 REVERSE LENGTH=410
Length = 410
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 28/197 (14%)
Query: 139 LVIYKDPAILVLNKPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRL-VHRLDRDCSGI 197
++++++P ++ + KP +PV +++ V L E+ +HRLDR SG+
Sbjct: 137 VILHQEPDVVTVCKPASVPVHPCGQYRKNTIV---GILDAEHDLGTLFPIHRLDRLVSGL 193
Query: 198 LVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 257
L++ RT A FR++ E +++++Y A VIG +V A++
Sbjct: 194 LIIARTAAKA----DFFRQQ---------IEGGMVKKRYIAKVIGVFPEDEMIVDANINY 240
Query: 258 VVVDNGKSDRITIVDNSS-----LLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLR 312
NG R T D +S + + A T++ I ++ ++ + P+TGR HQ+R
Sbjct: 241 ----NGSEGRSTAEDANSSGDDKKVKGKPACTKFTRIDTNG-THSLVSCEPVTGRTHQIR 295
Query: 313 VHCAEVLGTPIVGDYKY 329
VH + G PI D Y
Sbjct: 296 VHL-QYTGHPIANDPLY 311
>AT3G52260.3 | Symbols: | Pseudouridine synthase family protein |
chr3:19383452-19386440 REVERSE LENGTH=416
Length = 416
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 17/197 (8%)
Query: 140 VIYKDPAILVLNKPPGMPV-QGGIDIKRSLDVVAASCLKYE-------YSEPPRLVHRLD 191
V+Y+D ++ LNKP G+ V GG+ +R++ C S P VHRL
Sbjct: 129 VLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLG 188
Query: 192 RDCSGILVMGRTQTSATVLHSIFREKTS-SASDDLGTE---NRVLQRKYRALVIGCPRRP 247
R SGIL+ +T+ + T L + F E TS S +L E R L + YRAL G
Sbjct: 189 RGTSGILLCAKTKLAKTKLAAYFAEGTSLVGSGNLDQECGTGRKLSKIYRALADGIVEED 248
Query: 248 RGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVIGSSSHGYTWLELSPLTGR 307
++ +G VV G + + + + R + +++ +GR
Sbjct: 249 EVVIKQPIG-VVRYPGVAQGLYVASPEGKPAFSKVFVLER---DREKNCSLVKVEIQSGR 304
Query: 308 KHQLRVHCAEVLGTPIV 324
HQ+R+H A +G P+V
Sbjct: 305 PHQIRIHLA-YMGHPLV 320
>AT3G52260.1 | Symbols: | Pseudouridine synthase family protein |
chr3:19383983-19386440 REVERSE LENGTH=294
Length = 294
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 17/196 (8%)
Query: 140 VIYKDPAILVLNKPPGMPV-QGGIDIKRSLDVVAASCLKYE-------YSEPPRLVHRLD 191
V+Y+D ++ LNKP G+ V GG+ +R++ C S P VHRL
Sbjct: 99 VLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLG 158
Query: 192 RDCSGILVMGRTQTSATVLHSIFREKTS-SASDDLGTE---NRVLQRKYRALVIGCPRRP 247
R SGIL+ +T+ + T L + F E TS S +L E R L + YRAL G
Sbjct: 159 RGTSGILLCAKTKLAKTKLAAYFAEGTSLVGSGNLDQECGTGRKLSKIYRALADGIVEED 218
Query: 248 RGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVIGSSSHGYTWLELSPLTGR 307
++ +G VV G + + + + R + +++ +GR
Sbjct: 219 EVVIKQPIG-VVRYPGVAQGLYVASPEGKPAFSKVFVLER---DREKNCSLVKVEIQSGR 274
Query: 308 KHQLRVHCAEVLGTPI 323
HQ+R+H A +G P+
Sbjct: 275 PHQIRIHLA-YMGHPL 289
>AT4G21770.1 | Symbols: | Pseudouridine synthase family protein |
chr4:11564028-11566345 REVERSE LENGTH=472
Length = 472
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 30/211 (14%)
Query: 132 EISFIRSLVIYKDPAILVLNKPPGMPVQGGID-IKRSLDVVAASCLKYEYSEPPRLVHRL 190
EI + +V D + ++L+KP G V G D I+ S A+ L + EP + H++
Sbjct: 204 EIDWKSRIVAVTD-SYVILDKPAGTTVGGTTDNIEESCATFASRAL--DLPEPLKTTHQI 260
Query: 191 DRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKYRAL--------VIG 242
D G +V RT+ +V H+ R N+ +++ YRAL +I
Sbjct: 261 DNCTEGCVVFARTKEYCSVFHTKIR-------------NKEVKKLYRALAAAPLPIGIIS 307
Query: 243 CPRRPRGLVTASLGKVVVDNGKSDRITIVDNSSLLSSQHAITEYRVI---GSSSHGYTW- 298
RP+ + + + + ++ +++ + A + I G +S + +
Sbjct: 308 HYMRPKNMAPRLVAEDSIQGWHLCQLEVLECKKIPWPDAATEKKHDIEDCGWTSKEFAYE 367
Query: 299 LELSPLTGRKHQLRVHCAEVLGTPIVGDYKY 329
++ LTG+ HQ+R A G P+VGD Y
Sbjct: 368 CTINLLTGKTHQIRAQLA-ACGAPLVGDSMY 397