Miyakogusa Predicted Gene
- Lj1g3v0013210.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0013210.1 Non Chatacterized Hit- tr|A9NXX4|A9NXX4_PICSI
Putative uncharacterized protein OS=Picea sitchensis P,54.43,1e-18,no
description,NULL; SUBFAMILY NOT NAMED,NULL; F-BOX/LEUCINE RICH REPEAT
PROTEIN,NULL; LRR_6,NULL;
R,NODE_6194_length_634_cov_819.507874.path1.1
(79 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1... 121 1e-28
AT5G25350.1 | Symbols: EBF2 | EIN3-binding F box protein 2 | chr... 108 6e-25
AT5G23340.1 | Symbols: | RNI-like superfamily protein | chr5:78... 57 3e-09
AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein | c... 52 6e-08
AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protei... 51 1e-07
AT5G27920.1 | Symbols: | F-box family protein | chr5:9942063-99... 51 1e-07
AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein | ch... 50 3e-07
AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily pr... 50 3e-07
AT3G07550.2 | Symbols: | RNI-like superfamily protein | chr3:24... 50 4e-07
AT3G07550.1 | Symbols: | RNI-like superfamily protein | chr3:24... 50 4e-07
AT5G01720.1 | Symbols: | RNI-like superfamily protein | chr5:26... 47 3e-06
>AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1 |
chr2:10848018-10850275 REVERSE LENGTH=628
Length = 628
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 66/79 (83%)
Query: 1 MGNGNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAAS 60
MGNG GL KL SLTI +C+GVTD+G+E+VGKGCPN+K + K LSDNGL+SF KA+
Sbjct: 328 MGNGVGLQKLNSLTITACQGVTDMGLESVGKGCPNMKKAIISKSPLLSDNGLVSFAKASL 387
Query: 61 SLENLQLEECHRITQFGFF 79
SLE+LQLEECHR+TQFGFF
Sbjct: 388 SLESLQLEECHRVTQFGFF 406
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 4 GNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLE 63
G L SL++ + +TD G+ + +GC L+ + L++C+ ++D GL++ K+ +L
Sbjct: 173 GRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAIAKSCPNLT 232
Query: 64 NLQLEECHRITQFGFF 79
L LE C RI G
Sbjct: 233 ELTLEACSRIGDEGLL 248
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 4 GNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLE 63
G +L+ L + C +TD G+ A+ K CPNL + L C+ + D GL++ ++ S L+
Sbjct: 199 AEGCAQLEKLELNRCSTITDKGLVAIAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLK 258
Query: 64 NLQLEECHRITQFGF 78
++ ++ C + G
Sbjct: 259 SVSIKNCPLVRDQGI 273
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 21 VTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLENLQLEECHRITQFGF 78
V+D+G+ ++G+ CP+L S+ L + ++DNGL+ + + LE L+L C IT G
Sbjct: 164 VSDLGLRSIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGL 221
>AT5G25350.1 | Symbols: EBF2 | EIN3-binding F box protein 2 |
chr5:8794842-8796882 REVERSE LENGTH=623
Length = 623
Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 62/79 (78%)
Query: 1 MGNGNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAAS 60
MGN GL KLKSL++ SCRG+TDVG+EAVG GCP+LK V L+KC +S GL++ K+A
Sbjct: 318 MGNAKGLKKLKSLSVMSCRGMTDVGLEAVGNGCPDLKHVSLNKCLLVSGKGLVALAKSAL 377
Query: 61 SLENLQLEECHRITQFGFF 79
SLE+L+LEECHRI QFG
Sbjct: 378 SLESLKLEECHRINQFGLM 396
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%)
Query: 21 VTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLENLQLEECHRITQFGFF 79
VTDVG+ AV GCP+L+ V L +SD GL ++ +E L L C IT G
Sbjct: 154 VTDVGLGAVAHGCPSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLV 212
>AT5G23340.1 | Symbols: | RNI-like superfamily protein |
chr5:7856314-7857983 FORWARD LENGTH=405
Length = 405
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 4 GNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLE 63
G L L+ L ++ CR ++D G+ AV +GC +L+++HL C F++D L S ++ LE
Sbjct: 120 GRCLSLLQFLDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDESLKSLSERCRDLE 179
Query: 64 NLQLEECHRITQFGF 78
L L+ C IT G
Sbjct: 180 ALGLQGCTNITDSGL 194
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 8 HKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKA-ASSLENLQ 66
L++L + C +TD G+ + KGC +KS+ ++KC+ + D G+ S KA ASSL+ L+
Sbjct: 176 RDLEALGLQGCTNITDSGLADLVKGCRKIKSLDINKCSNVGDAGVSSVAKACASSLKTLK 235
Query: 67 LEECHRI 73
L +C+++
Sbjct: 236 LLDCYKV 242
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 42/75 (56%)
Query: 4 GNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLE 63
G H L++L +A CR +TD ++++ + C +L+++ L C ++D+GL K ++
Sbjct: 146 AEGCHDLRALHLAGCRFITDESLKSLSERCRDLEALGLQGCTNITDSGLADLVKGCRKIK 205
Query: 64 NLQLEECHRITQFGF 78
+L + +C + G
Sbjct: 206 SLDINKCSNVGDAGV 220
>AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein |
chr4:8845927-8848701 FORWARD LENGTH=610
Length = 610
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 4 GNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLE 63
G G L+ L + C G+ D+ + ++ KGC NLK +H+ +C + + G+IS K SL
Sbjct: 394 GKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYEIGNKGIISIGKHCKSLT 453
Query: 64 NLQLEECHRI 73
L L C ++
Sbjct: 454 ELSLRFCDKV 463
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 4 GNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLE 63
G G KLK LT++ C V+ G+EA+ GC L+ V ++ C + G+ + K+ L+
Sbjct: 316 GKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLK 375
Query: 64 NLQLEECHRI 73
L L C RI
Sbjct: 376 ELALLYCQRI 385
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 4 GNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLE 63
G +LK L + C+ + + ++ +GKGC +L+ +HL C+ + D + S K +L+
Sbjct: 368 GKSCPRLKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLK 427
Query: 64 NLQLEECHRITQFGFF 79
L + C+ I G
Sbjct: 428 KLHIRRCYEIGNKGII 443
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 4 GNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLE 63
NG ++++L++ C V+ VG+ ++ + C +LKS+ L C ++ D GL + K LE
Sbjct: 136 ANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQGC-YVGDQGLAAVGKFCKQLE 194
Query: 64 NLQLEECHRITQFGFF 79
L L C +T G
Sbjct: 195 ELNLRFCEGLTDVGVI 210
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 4 GNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLE 63
+G +L+ + I C + GIEA+GK CP LK + L C + ++ L K SLE
Sbjct: 342 AHGCKELERVEINGCHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQEIGKGCKSLE 401
Query: 64 NLQLEECHRITQFGF 78
L L +C I
Sbjct: 402 ILHLVDCSGIGDIAM 416
>AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protein |
chr1:7497479-7499386 FORWARD LENGTH=360
Length = 360
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%)
Query: 4 GNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLE 63
GN ++++SL + C ++D G+ ++ GCP+L+++ L C ++D +++ L
Sbjct: 192 GNNCNQMQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCGCVLITDESVVALADWCVHLR 251
Query: 64 NLQLEECHRITQFGFF 79
+L L C IT +
Sbjct: 252 SLGLYYCRNITDRAMY 267
>AT5G27920.1 | Symbols: | F-box family protein |
chr5:9942063-9944507 REVERSE LENGTH=642
Length = 642
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 15 IASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLENLQLEECHRIT 74
++ C VTD+G+ ++ + C NLK+++L C F++D + + ++ +L L+LE CH IT
Sbjct: 332 LSRCVDVTDIGMISLARNCLNLKTLNLACCGFVTDVAISAVAQSCRNLGTLKLESCHLIT 391
Query: 75 QFGF 78
+ G
Sbjct: 392 EKGL 395
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 10 LKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLENLQLEE 69
LK+L +A C VTDV I AV + C NL ++ L C +++ GL S + ++ L L +
Sbjct: 353 LKTLNLACCGFVTDVAISAVAQSCRNLGTLKLESCHLITEKGLQSLGCYSMLVQELDLTD 412
Query: 70 CHRITQFGF 78
C+ + G
Sbjct: 413 CYGVNDRGL 421
>AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein |
chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 4 GNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLE 63
G ++L+SL + C ++D G+ ++ GCP+L+++ L C ++D +++ L
Sbjct: 192 GENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLR 251
Query: 64 NLQLEECHRITQFGFF 79
+L L C IT +
Sbjct: 252 SLGLYYCRNITDRAMY 267
>AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily
protein | chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 4 GNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLE 63
G ++L+SL + C ++D G+ ++ GCP+L+++ L C ++D +++ L
Sbjct: 192 GENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLR 251
Query: 64 NLQLEECHRITQFGFF 79
+L L C IT +
Sbjct: 252 SLGLYYCRNITDRAMY 267
>AT3G07550.2 | Symbols: | RNI-like superfamily protein |
chr3:2409946-2411133 FORWARD LENGTH=395
Length = 395
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 9 KLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLENLQLE 68
+L +L + C G++D GI + CPNL V L++C +SD GL + +A+ SL+ + L
Sbjct: 118 RLHTLYLDCCFGISDDGISTIASFCPNLSVVSLYRCN-ISDIGLETLARASLSLKCVNLS 176
Query: 69 ECHRITQFG 77
C ++ FG
Sbjct: 177 YCPLVSDFG 185
>AT3G07550.1 | Symbols: | RNI-like superfamily protein |
chr3:2409946-2411133 FORWARD LENGTH=395
Length = 395
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 9 KLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLENLQLE 68
+L +L + C G++D GI + CPNL V L++C +SD GL + +A+ SL+ + L
Sbjct: 118 RLHTLYLDCCFGISDDGISTIASFCPNLSVVSLYRCN-ISDIGLETLARASLSLKCVNLS 176
Query: 69 ECHRITQFG 77
C ++ FG
Sbjct: 177 YCPLVSDFG 185
>AT5G01720.1 | Symbols: | RNI-like superfamily protein |
chr5:267118-270391 REVERSE LENGTH=665
Length = 665
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 4 GNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLE 63
G G L+ L + G+TDVGI + +GC +L+++++ C ++D L+S +K S L+
Sbjct: 453 GMGCSNLRELDLYRSVGITDVGISTIAQGCIHLETINISYCQDITDKSLVSLSK-CSLLQ 511
Query: 64 NLQLEECHRITQFGF 78
+ C IT G
Sbjct: 512 TFESRGCPNITSQGL 526