Miyakogusa Predicted Gene

Lj0g3v0364439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0364439.1 Non Chatacterized Hit- tr|I1MZ94|I1MZ94_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38897
PE,97.56,9e-16,RCC1_3,Regulator of chromosome condensation, RCC1; no
description,Regulator of chromosome condensati,CUFF.25105.1
         (61 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G53830.1 | Symbols:  | Regulator of chromosome condensation (...    67   2e-12
AT3G55580.1 | Symbols:  | Regulator of chromosome condensation (...    66   5e-12

>AT3G53830.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family protein | chr3:19940814-19943592 FORWARD
           LENGTH=472
          Length = 472

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 21  QLGLGDVIDRNVPSEVTIEGCVAKNVACGWWHTLLLAESPT 61
           QLGLGD  DRN+P++V ++GC  + VACGWWHTLLL +SPT
Sbjct: 432 QLGLGDTNDRNIPTQVQLDGCRLRKVACGWWHTLLLGDSPT 472


>AT3G55580.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family protein | chr3:20612766-20615730 FORWARD
           LENGTH=488
          Length = 488

 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 32/38 (84%)

Query: 21  QLGLGDVIDRNVPSEVTIEGCVAKNVACGWWHTLLLAE 58
           QLG+GDVIDRN P+EV I+ C  KN+ACGWWHTLLL +
Sbjct: 448 QLGIGDVIDRNAPAEVRIKDCFPKNIACGWWHTLLLGQ 485