Miyakogusa Predicted Gene

Lj0g3v0364329.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0364329.1 tr|A9SZZ9|A9SZZ9_PHYPA RNA polymerase II
transcription elongation factor SPT5 OS=Physcomitrella
pate,45.97,1e-18,In Spt5p, this domain may confer affinity
fo,Transcription antitermination protein, NusG,
N-terminal,gene.g28661.t1.1
         (419 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G08350.1 | Symbols: GTA02, GTA2 | global transcription factor...   215   5e-56
AT2G34210.1 | Symbols:  | Transcription elongation factor Spt5 |...   198   7e-51
AT5G04290.1 | Symbols: KTF1, SPT5L | kow domain-containing trans...    92   5e-19

>AT4G08350.1 | Symbols: GTA02, GTA2 | global transcription factor
           group A2 | chr4:5286351-5292072 FORWARD LENGTH=1041
          Length = 1041

 Score =  215 bits (547), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 164/420 (39%), Positives = 213/420 (50%), Gaps = 124/420 (29%)

Query: 76  GADLPEEVDGRRMCGSRVLPYFKEDHDDLEAMAASIEKRYG-RRLEDYNEEIAYVEQ-AF 133
           G DLP+E  G R    R LP   E+ +D+E +   I++R+  R  E+Y+EE   VEQ A 
Sbjct: 118 GTDLPDE-RGDRRYERRFLPR-DENDEDVEDLERRIQERFSSRHHEEYDEEATEVEQQAL 175

Query: 134 LPSVRDPKLWMLKCAIGQERKTAVCLMQKCMNKGSELKIRSAIALDHLKNYIYVEADKEA 193
           LPSVRDPKLWM+KCAIG+ER+ AVCLMQK +++G++L+IRS +ALDHLKN+IYVEADKEA
Sbjct: 176 LPSVRDPKLWMVKCAIGREREVAVCLMQKFIDRGADLQIRSVVALDHLKNFIYVEADKEA 235

Query: 194 HVREACKGLRSLFG-QKPTLVPVREMTGVLSVESKAANLARDARVRRKI----------- 241
           HV+EA KG+R+++  QK  LVP+REMT VLSVESKA +L+RD  VR KI           
Sbjct: 236 HVKEAIKGMRNIYANQKILLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVV 295

Query: 242 ---------------------------GRELVKKKAFVPPHR---INEARELH-----KR 266
                                      GRE+ KKKAFVPP R   I+EARELH     +R
Sbjct: 296 DVDNVRQRVTVKLIPRIDLQALASKLDGREVSKKKAFVPPPRFMNIDEARELHIRVERRR 355

Query: 267 QFMIGDFVLVING------------DLKNL--KGWVEKVDEDIVHIRPKNEGLP-----K 307
             M GD+   I G             LK++  +      DE     +P   G        
Sbjct: 356 DHMTGDYFENIGGMLFKDGFHYKQVSLKSITVQNVTPTFDELEKFNKPSENGEGDFGGLS 415

Query: 308 TLTLNKKELCKYFEPGSHVKVVAGAEEGETGMVVKVEQ---------------------- 345
           TL  N+K+   +F  G  V V+ G  +   G V KV++                      
Sbjct: 416 TLFANRKK--GHFMKGDAVIVIKGDLKNLKGWVEKVDEENVLIRSEVKGLPDPLAVNERE 473

Query: 346 ---------HVMVI---------------------ISDTTKQQICVFADHVMESSGVIAG 375
                    HV V+                     +SDTTK+ + VFADHV+ESS V  G
Sbjct: 474 LCKYFEPGNHVKVVSGTHEGATGMVVKVDQHVLIILSDTTKEHVRVFADHVVESSEVTTG 533


>AT2G34210.1 | Symbols:  | Transcription elongation factor Spt5 |
           chr2:14445938-14450522 FORWARD LENGTH=989
          Length = 989

 Score =  198 bits (503), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 153/422 (36%), Positives = 205/422 (48%), Gaps = 128/422 (30%)

Query: 77  ADLP-EEVDGRRMCGSRVLPYFKEDHDDLEAMAAS-IEKRYGR---RLEDYNEEIAYVEQ 131
           ADLP E+ D RR    R     +ED D+LE      +  +Y +    L+D N+     +Q
Sbjct: 104 ADLPNEDSDHRRQYYQRGFHPHEEDVDELEKRTLERLSTKYAKDDYELDDVND---VDQQ 160

Query: 132 AFLPSVRDPKLWMLKCAIGQERKTAVCLMQKCMNKGSELKIRSAIALDHLKNYIYVEADK 191
           A LPSVRDPKLW++KCAIG+ER+ AVCLMQK +++GSE KIRSAIALDHL+NY+Y+EAD 
Sbjct: 161 ALLPSVRDPKLWLVKCAIGREREVAVCLMQKIVDRGSEFKIRSAIALDHLQNYVYIEADM 220

Query: 192 EAHVREACKGLRSLFG-QKPTLVPVREMTGVLSVESKAANLARDARVRRKI--------- 241
           EAHV+EA KG+R+++  QK  LVP++EMT VLSVESKA +L+RD+ VR K+         
Sbjct: 221 EAHVKEAIKGMRNIYANQKILLVPIKEMTAVLSVESKAIDLSRDSWVRMKLGIYKGDLAQ 280

Query: 242 -----------------------------GRELVKKKAFVPPHR---INEAREL-----H 264
                                        G E VKKKAF PP R   I+EAREL     H
Sbjct: 281 VVDVDNVRKRVTVKLIPRIDLQALANKLEGTENVKKKAFAPPPRFMNIDEARELHIRVEH 340

Query: 265 KRQFMIGDFVLVINGDLKNLKGWVEKVDEDIV---HIRPKNEGLPK-------------- 307
           +R  M GD+   I G L       +KV    +   ++ P  + L +              
Sbjct: 341 RRDPMTGDYFENIGGMLFKDGFLYKKVSTKSIAAQNVTPTFDELERFKRPNENGEIDFVD 400

Query: 308 --TLTLNKKELCKYFEPGSHVKVVAGAEEGETGMVVKVEQHVMVIIS------------- 352
             TL  N+K+   +F  G  V V+ G  +   G + KV++  ++I S             
Sbjct: 401 ESTLFANRKK--GHFMKGDAVIVIKGDLKNLKGWIEKVDEENVLIRSEMKDLPNPIAVNG 458

Query: 353 ---------------------------------------DTTKQQICVFADHVMESSGVI 373
                                                  DTTK+ ICVFADHV +S+ V 
Sbjct: 459 RELCKYFEPGNFVKVVSGIHEGGTGMIVKVDQHMLIILSDTTKEHICVFADHVAKSAEVT 518

Query: 374 AG 375
            G
Sbjct: 519 KG 520


>AT5G04290.1 | Symbols: KTF1, SPT5L | kow domain-containing
           transcription factor 1 | chr5:1196069-1202653 FORWARD
           LENGTH=1493
          Length = 1493

 Score = 92.4 bits (228), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 10/167 (5%)

Query: 85  GRRMCGSRVLPYFKEDHDDLEAMAASIEKRYGR-----RLEDYNEEIAYVEQAFLPSVRD 139
           G +   S V P  KE+  + E     +E+RY       R  D + + A    A  P+ +D
Sbjct: 88  GEKGKSSFVFP--KEEDLNEEEFDRIMEERYKPGSGFLRYADDDIKDAIEMDALAPTSKD 145

Query: 140 PKLWMLKCAIGQERKTAVCLMQKCMNK---GSELKIRSAIALDHLKNYIYVEADKEAHVR 196
           P +W +KCAIG+ER++  CLM K +     G++L+I S  ++DH+K +I++EADKE  V 
Sbjct: 146 PPIWKVKCAIGRERRSVFCLMHKFVELRKIGTKLEIISVFSVDHVKGFIFIEADKEHDVL 205

Query: 197 EACKGLRSLFGQKPTLVPVREMTGVLSVESKAANLARDARVRRKIGR 243
           EACK L  ++  +  L+P  E   +L+V+ K   ++     R K G+
Sbjct: 206 EACKSLVGIYATRMVLLPKAETPNLLTVQKKTKKVSEGTWARVKNGK 252