Miyakogusa Predicted Gene

Lj0g3v0364159.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0364159.1 Non Chatacterized Hit- tr|B9RZG9|B9RZG9_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,34.52,1e-16,B3,B3 DNA binding domain; no description,DNA-binding
pseudobarrel domain; DNA-binding pseudobarrel d,CUFF.25085.1
         (191 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 | chr1...    63   1e-10
AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional...    61   5e-10
AT2G24645.1 | Symbols:  | Transcriptional factor B3 family prote...    58   4e-09
AT4G31690.1 | Symbols:  | Transcriptional factor B3 family prote...    54   8e-08
AT2G24700.1 | Symbols:  | Transcriptional factor B3 family prote...    53   1e-07
AT4G33280.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    51   5e-07
AT4G00260.1 | Symbols: MEE45 | Transcriptional factor B3 family ...    51   6e-07
AT4G31620.1 | Symbols:  | Transcriptional factor B3 family prote...    50   7e-07

>AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 |
           chr1:18314596-18315460 REVERSE LENGTH=226
          Length = 226

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 57/109 (52%), Gaps = 9/109 (8%)

Query: 84  ARKYTPKNPSFTVSLNPVIKPAYRPPV---PISFIREYLNEKKQIINLKIEEKLWPVEFI 140
           A+ + P NP F V L P     YR  +   P  F  +YL+     I L++ EK WPV  +
Sbjct: 119 AKTFEPTNPYFRVVLRPSY--LYRGCIMYLPSGFAEKYLSGISGFIKLQLGEKQWPVRCL 176

Query: 141 YYPEFGLGKLSKGWIIFAKESKLVGGDVCVFELINKDEENPVLEVHIFK 189
           Y  + G  K S+GW  F  E+ +  GDVCVFEL+     + VLEV  F+
Sbjct: 177 Y--KAGRAKFSQGWYEFTLENNIGEGDVCVFELLRT--RDFVLEVTAFR 221


>AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional
           factor family protein | chr3:6549077-6551568 REVERSE
           LENGTH=341
          Length = 341

 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 9/109 (8%)

Query: 84  ARKYTPKNPSFTVSLNPVIKPAYRPPV---PISFIREYLNEKKQIINLKIEEKLWPVEFI 140
           A+ + P NP F V L P     YR  +   P  F  +YL+     I +++ EK WPV  +
Sbjct: 234 AKTFEPTNPFFRVVLRPSY--LYRGCIMYLPSGFAEKYLSGISGFIKVQLAEKQWPVRCL 291

Query: 141 YYPEFGLGKLSKGWIIFAKESKLVGGDVCVFELINKDEENPVLEVHIFK 189
           Y  + G  K S+GW  F  E+ L  GDVCVFEL+     + VL+V  F+
Sbjct: 292 Y--KAGRAKFSQGWYEFTLENNLGEGDVCVFELLRT--RDFVLKVTAFR 336


>AT2G24645.1 | Symbols:  | Transcriptional factor B3 family protein
           | chr2:10480728-10482650 REVERSE LENGTH=490
          Length = 490

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 21/175 (12%)

Query: 15  TWKVYYSFFKLGGGWKKFATDNNLKVGDICVFELTKREPLSLKVLIFPVAQGGVPSSLGP 74
           TW+V     +L  GWK+FA  ++L++GDI VF   +   +S  V +        PS    
Sbjct: 48  TWEVKIDGQRLTDGWKEFALSHDLRIGDIVVFR--QERDMSFHVTMLG------PSCCEI 99

Query: 75  HFTNAAQREARKYTPKNP---SFTVSLNPVIKPAYRPPV---------PISFIREY-LNE 121
            + + +  E      KNP   + + SL+P    A   P          P+ F+RE  +  
Sbjct: 100 QYGSCSDEERNLEKKKNPNGEAKSSSLDPSCFSANVAPSSLRYDLMLFPMGFVRENGVVG 159

Query: 122 KKQIINLKIEEKLWPVEFIYYPEFGLGKLSKGWIIFAKESKLVGGDVCVFELINK 176
             +I+ +  + + W       P  G   +  GW+ F   + L  GD+  F+LI +
Sbjct: 160 SGKIVLMNEKGRSWNFNLRQKPSCGTVYVRGGWVSFCDANGLQAGDIYTFKLIKR 214


>AT4G31690.1 | Symbols:  | Transcriptional factor B3 family protein
           | chr4:15343327-15345161 REVERSE LENGTH=461
          Length = 461

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 34/196 (17%)

Query: 14  RTWKVYYSFFKLGGGWKKFATDNNLKVGDICVFELTKREPLSLKVLIFPVAQGGVPSSLG 73
           RTW+V     +L  GWK+F   ++L++GD  VF            ++F V   G PS   
Sbjct: 55  RTWEVKMEGHRLTEGWKEFVEAHDLRIGDFVVFRHEGD-------MVFHVTALG-PSCCE 106

Query: 74  PHFTNAA----------------------QREARKYTPKNPSFTVSLNPVIKPAYRPPVP 111
             +  ++                      Q+E+ K +     F+ S+           VP
Sbjct: 107 IQYPQSSRHEEGEESGENEISEKEGEENVQKESDKSSSDLNCFSQSVTHSNISRDAVSVP 166

Query: 112 ISFIRE--YLNEKKQIINLKIEEKLWPVEFIYYPEFGLGKLSKGWIIFAKESKLVGGDVC 169
             F++   +   + +I+ +  E K W  E   Y   G   L  GW  F  E+KL  GD C
Sbjct: 167 RDFVKRSGFSKGRHEIVLMNEEGKSWESEVKSYMS-GAVYLVGGWTTFCTENKLDVGDSC 225

Query: 170 VFELINKDEENPVLEV 185
            F+L+ K  + PV ++
Sbjct: 226 TFKLLQK-AKTPVFQL 240


>AT2G24700.1 | Symbols:  | Transcriptional factor B3 family protein
           | chr2:10513049-10515288 REVERSE LENGTH=555
          Length = 555

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 14/195 (7%)

Query: 1   MKKGDIRLERLDGRTWKV-------YYSFFKLGGGWKKFATDNNLKVGDICVFELTKREP 53
           M K  I L   +G +WK+        Y  F +  GW+ F   N  K GD+  F+L K E 
Sbjct: 178 MNKYQIVLMNEEGESWKIDLRREAYNYGRFYMRRGWRSFCIANGKKPGDVFAFKLVKNEE 237

Query: 54  LSLKVLIFPVAQGGVP--SSLGPHFTNAAQREARKYTPKNPSFTVSLNPVIKPAYRPPVP 111
             + + +FP+    +    SL  H     + EA   +P   SF  ++        R  +P
Sbjct: 238 TPM-IQLFPMTIEDLDKLQSLPRH--KIRKTEAAPSSPDLSSFVATVTASNLSRDRLYLP 294

Query: 112 ISFIREY-LNEKKQIINLKIEEKLWPVEFIYYPEFGLGKLSKGWIIFAKESKLVGGDVCV 170
            +FI    L +K Q+  +  E + W ++  +    G     +GW  F   +    GD+  
Sbjct: 295 KTFIMSNGLLKKFQMCLMNEEGESWTIDVKHEAHTGRFLTIRGWRRFCVANGKKPGDLLK 354

Query: 171 FELINKDEENPVLEV 185
           F+L++ +EE PVL++
Sbjct: 355 FKLVH-NEETPVLQL 368


>AT4G33280.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr4:16047357-16049310 REVERSE LENGTH=337
          Length = 337

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 10  RLDGRTWKVYYSFFKLGG------GWKKFATDNNLKVGDICVFELTKRE--PLSLKVLIF 61
           ++D   W++ ++ F   G      GWKKF  DNNL+ GD+CVFE    E  PL L V IF
Sbjct: 259 QVDQTKWEMKFNIFGARGSGGISTGWKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIF 318

Query: 62  PVAQGGVPSSLGPHFT 77
              +    +++ P +T
Sbjct: 319 RGEETERTNNVDPVYT 334



 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 41/68 (60%)

Query: 123 KQIINLKIEEKLWPVEFIYYPEFGLGKLSKGWIIFAKESKLVGGDVCVFELINKDEENPV 182
           +Q + +++++  W ++F  +   G G +S GW  F +++ L  GDVCVFE  N + +   
Sbjct: 253 RQEVVMQVDQTKWEMKFNIFGARGSGGISTGWKKFVQDNNLREGDVCVFEPANSETKPLH 312

Query: 183 LEVHIFKG 190
           L V+IF+G
Sbjct: 313 LNVYIFRG 320


>AT4G00260.1 | Symbols: MEE45 | Transcriptional factor B3 family
           protein | chr4:114971-117051 FORWARD LENGTH=528
          Length = 528

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 14/175 (8%)

Query: 14  RTWKVYYSFFKLGGGWKKFATDNNLKVGDICVFELTKREPLSLKV-LIFPVAQGGVPSSL 72
           RTW+V     +L  GWK+FA  ++L++GDI VF   +   L+  V L+ P   G    S 
Sbjct: 47  RTWEVKIDGQRLTDGWKEFAVSHDLRIGDIVVFR--QESDLAFHVTLLGPSCCGIQYGSC 104

Query: 73  GPHFTNAAQREAR-KYTPKNPSFTVSLNPVIKPAYRPPV---------PISFIREY-LNE 121
                N    + + K  P   + + S +P    A   P          P  F+R+  +  
Sbjct: 105 SVEKNNLGDEKKKVKENPNGEAESSSRDPSCFVANVAPSSLRYDLMRFPRGFVRDNGVVG 164

Query: 122 KKQIINLKIEEKLWPVEFIYYPEFGLGKLSKGWIIFAKESKLVGGDVCVFELINK 176
             +I+ +  + + W       P  G   +  GW+ F   + L  GD   F+LI +
Sbjct: 165 SGEIVLMNEKGRSWNFNLRQKPSNGTVYVRGGWVSFCDANGLKAGDNYTFKLIKR 219


>AT4G31620.1 | Symbols:  | Transcriptional factor B3 family protein
           | chr4:15322759-15324658 REVERSE LENGTH=492
          Length = 492

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 12/191 (6%)

Query: 6   IRLERLDGRTWKVYYSFFK------LGGGWKKFATDNNLKVGDICVFELTKREPLSLKVL 59
           I L  L G +W +     K      + G W+ F   N LK G    F+L +     L  L
Sbjct: 188 IDLMNLSGESWTLGLRHNKRTGQAFIRGRWRSFCHANELKPGSFYRFKLVRNGTRPLLQL 247

Query: 60  IFPVA-QGGVPSSLGPHFTNAAQREARK----YTPKNPSFTVSLNPVIKPAYRPPVPISF 114
            F V  QG   +S      N +++ +R+     T +N   TV+L   +  + +  +  SF
Sbjct: 248 CFKVIPQGNCSNSKANGKANVSEKYSREDGSASTKQNKFLTVTLKHYMIQSGQLRLRRSF 307

Query: 115 IREY-LNEKKQIINLKIEEKLWPVEFIYYPEFGLGKLSKGWIIFAKESKLVGGDVCVFEL 173
           +RE  + E ++II +      WP       +     ++ GWI F + +KL  G+    E 
Sbjct: 308 VRENGIKEAEEIILVDKNGVEWPSYVSSSKQRREFYMAHGWIRFCEANKLKTGETFTLEF 367

Query: 174 INKDEENPVLE 184
           +  +   P+L+
Sbjct: 368 VRGEGTTPMLK 378