Miyakogusa Predicted Gene

Lj0g3v0363599.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0363599.3 Non Chatacterized Hit- tr|I1LXD4|I1LXD4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.4378
PE=,72.73,0,seg,NULL; CCCH zinc finger,NULL; zinc finger,Zinc finger,
CCCH-type; ZF_C3H1,Zinc finger, CCCH-type;,CUFF.25062.3
         (412 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21580.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...   377   e-105
AT1G30460.2 | Symbols: CPSF30, ATCPSF30 | cleavage and polyadeny...    49   7e-06
AT1G30460.1 | Symbols: CPSF30, ATCPSF30 | cleavage and polyadeny...    49   7e-06

>AT1G21580.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
            protein | chr1:7557822-7565655 REVERSE LENGTH=2166
          Length = 2166

 Score =  377 bits (969), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/309 (58%), Positives = 215/309 (69%), Gaps = 5/309 (1%)

Query: 78   ERIFRIGSVRYRMDPSRRTLQRXXXXXXXXXXXXXXXXXXXXXYVPRRLVIGNDEYVRIG 137
            ER+FR GS+RY+MD SRRTLQR                     ++P+RLVIGN+EYVR G
Sbjct: 1844 ERVFRFGSLRYKMDSSRRTLQRISDVDSPCSGPSENGKGVKRPFIPKRLVIGNEEYVRFG 1903

Query: 138  NGNQLIRDPKKRTRKLANEKVRWSLHTARQRFARKQKYCQFFTRFGKCNKDGGKCPYIHD 197
            NGNQL+RDPKKRTR LANEKVRWSLH AR R A+K+KYCQFFTRFGKCNKD GKCPY+HD
Sbjct: 1904 NGNQLVRDPKKRTRVLANEKVRWSLHNARLRLAKKKKYCQFFTRFGKCNKDDGKCPYVHD 1963

Query: 198  PSKVAVCTKFLNGLCSTPNCKLTHKVIQERMPDCSYFFQGLCTNRNCPYRHVNVNPKASI 257
            PSK+AVCTKFLNGLC+  NCKLTHKVI ERMPDCSY+ QGLC N  CPYRHV+VNP A I
Sbjct: 1964 PSKIAVCTKFLNGLCANANCKLTHKVIPERMPDCSYYLQGLCNNEACPYRHVHVNPIAPI 2023

Query: 258  CEGFLKGYCADGNECLKKHSYVCPTFEATGTCVQGTKCKLHHPXXXXXXXXXXXXED--- 314
            C+GFLKGYC++G+EC KKHSY CP FEATG+C QG KCKLHHP             +   
Sbjct: 2024 CDGFLKGYCSEGDECRKKHSYNCPVFEATGSCSQGLKCKLHHPKNQSKGRKRKRTNEPSQ 2083

Query: 315  QNSRGRYFGSIPVDVSEPGMMVAASSHQDLDL-EKELSDYISLDVNE-EVADMVDQSFEH 372
            +N+R RYF S+   +SE   MV      D ++   E  D+I+L   E E  D  D +   
Sbjct: 2084 KNARRRYFSSLHNILSESEPMVFNRRSTDSEVFGMESLDFITLGTAEYEAGDDNDPATVQ 2143

Query: 373  SEFCDNDSM 381
            S   D++S+
Sbjct: 2144 SISSDSESL 2152


>AT1G30460.2 | Symbols: CPSF30, ATCPSF30 | cleavage and
           polyadenylation specificity factor 30 |
           chr1:10774446-10775323 REVERSE LENGTH=250
          Length = 250

 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 203 VCTKFLNGLCSTPN-CKLTHKVIQERMPDCSYF-FQGLCTNRNCPYRHVNVNPKASICEG 260
           VC  +L GLC   + C   H+  + RMP C +F   G C  ++C Y+H N + K   C  
Sbjct: 65  VCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDCVYKHTNEDIKE--CNM 122

Query: 261 FLKGYCADGNECLKKHS 277
           +  G+C +G +C  +H+
Sbjct: 123 YKLGFCPNGPDCRYRHA 139


>AT1G30460.1 | Symbols: CPSF30, ATCPSF30 | cleavage and
           polyadenylation specificity factor 30 |
           chr1:10771469-10775323 REVERSE LENGTH=631
          Length = 631

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 203 VCTKFLNGLCSTPN-CKLTHKVIQERMPDCSYF-FQGLCTNRNCPYRHVNVNPKASICEG 260
           VC  +L GLC   + C   H+  + RMP C +F   G C  ++C Y+H N + K   C  
Sbjct: 65  VCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDCVYKHTNEDIKE--CNM 122

Query: 261 FLKGYCADGNECLKKHS 277
           +  G+C +G +C  +H+
Sbjct: 123 YKLGFCPNGPDCRYRHA 139