Miyakogusa Predicted Gene

Lj0g3v0363549.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0363549.1 Non Chatacterized Hit- tr|I1JMM8|I1JMM8_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,36.42,4e-19,SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL; FAR1,FAR1 DNA binding
domain,CUFF.25046.1
         (189 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38180.1 | Symbols: FRS5 | FAR1-related sequence 5 | chr4:179...    74   5e-14
AT5G28530.1 | Symbols: FRS10 | FAR1-related sequence 10 | chr5:1...    74   6e-14
AT1G10240.1 | Symbols: FRS11 | FAR1-related sequence 11 | chr1:3...    64   7e-11
AT3G59470.2 | Symbols:  | Far-red impaired responsive (FAR1) fam...    55   4e-08
AT3G59470.1 | Symbols:  | Far-red impaired responsive (FAR1) fam...    55   4e-08
AT2G43280.1 | Symbols:  | Far-red impaired responsive (FAR1) fam...    53   1e-07
AT4G15090.1 | Symbols: FAR1 | FRS (FAR1 Related Sequences) trans...    51   4e-07
AT3G07500.1 | Symbols:  | Far-red impaired responsive (FAR1) fam...    48   4e-06

>AT4G38180.1 | Symbols: FRS5 | FAR1-related sequence 5 |
           chr4:17906702-17909404 REVERSE LENGTH=788
          Length = 788

 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 76/156 (48%), Gaps = 7/156 (4%)

Query: 18  RFSSREVAFLFYNMYARVKGFSARKDKLLRDK-NRQIIQQNFVCHKQGRRTNIFGDERTR 76
            F S E A  FYN YAR  GFS R     R + +  IIQ+ FVC K+G R     ++RT+
Sbjct: 78  EFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRN--MNEKRTK 135

Query: 77  KRE---PMKDIRCGCRAECRVHIDCNSNRWYVKYFDDEHNHLLVRANHAGLLPRHRRMQD 133
            RE   P    R GC+A   V +  +S +W V  F  +HNH LV  +    L  HR++  
Sbjct: 136 DREIKRPRTITRVGCKASLSVKMQ-DSGKWLVSGFVKDHNHELVPPDQVHCLRSHRQISG 194

Query: 134 ADIMHMNHMRRAQNGIRNIYGSFANQMGGYENVPFS 169
                ++ ++ A  G R I  +   + GG   V F+
Sbjct: 195 PAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFT 230


>AT5G28530.1 | Symbols: FRS10 | FAR1-related sequence 10 |
           chr5:10525078-10527300 REVERSE LENGTH=685
          Length = 685

 Score = 73.9 bits (180), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 69/124 (55%), Gaps = 13/124 (10%)

Query: 19  FSSREVAFLFYNMYARVKGFSARKDKLLRDKNRQIIQQNFVCHKQG-----RRTNIFGDE 73
           F++ + AF +Y+ +AR  GFS RK +    +N  + +++FVC++ G     ++ N+   E
Sbjct: 61  FTTDDEAFEYYSTFARKSGFSIRKARSTESQNLGVYRRDFVCYRSGFNQPRKKANV---E 117

Query: 74  RTRKREPMKDIRCGCRAECRVHIDC--NSNRWYVKYFDDEHNHLLVRANHAGLLPRHRRM 131
             R+R   K +RCGC  +  +  +     + WYV  F + HNH L+  +   LLP +R++
Sbjct: 118 HPRER---KSVRCGCDGKLYLTKEVVDGVSHWYVSQFSNVHNHELLEDDQVRLLPAYRKI 174

Query: 132 QDAD 135
           Q +D
Sbjct: 175 QQSD 178


>AT1G10240.1 | Symbols: FRS11 | FAR1-related sequence 11 |
           chr1:3356835-3359271 REVERSE LENGTH=680
          Length = 680

 Score = 63.9 bits (154), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 19  FSSREVAFLFYNMYARVKGFSARKDKLLRDKN--RQIIQQNFVCHKQGRRTNIFGDERTR 76
           F + + A+ FY+ +A+  GFS R+ +        + + ++ FVCH+ G  T I      +
Sbjct: 54  FLTHDTAYEFYSTFAKRCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGN-TPIKTLSEGK 112

Query: 77  KREPMKDIRCGCRAECRVH--IDCNSNRWYVKYFDDEHNHLLVRANHAGLLPRHRRMQDA 134
            +   +  RCGC+A  R+    +  S  W V  F + HNH L+  N    LP +R + DA
Sbjct: 113 PQRNRRSSRCGCQAYLRISKLTELGSTEWRVTGFANHHNHELLEPNQVRFLPAYRSISDA 172

Query: 135 D 135
           D
Sbjct: 173 D 173


>AT3G59470.2 | Symbols:  | Far-red impaired responsive (FAR1) family
           protein | chr3:21979099-21980097 REVERSE LENGTH=251
          Length = 251

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 5/100 (5%)

Query: 19  FSSREVAFLFYNMYARVKGFSARKDKLLRDK-NRQIIQQNFVCHKQGRRTNIFGDERTRK 77
           F S   A  FYN YA   GF  R  KL R + +   I +  VC+K+G R     D+  R+
Sbjct: 76  FESEAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRDKVIRQ 135

Query: 78  REPMKDIRCGCRAECRVHIDCNSNRWYVKYFDDEHNHLLV 117
           R    + R GC+A   +  + NS +W +  F  EHNH L+
Sbjct: 136 R---AETRVGCKAMILIRKE-NSGKWVITKFVKEHNHSLM 171


>AT3G59470.1 | Symbols:  | Far-red impaired responsive (FAR1) family
           protein | chr3:21979099-21980097 REVERSE LENGTH=251
          Length = 251

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 5/100 (5%)

Query: 19  FSSREVAFLFYNMYARVKGFSARKDKLLRDK-NRQIIQQNFVCHKQGRRTNIFGDERTRK 77
           F S   A  FYN YA   GF  R  KL R + +   I +  VC+K+G R     D+  R+
Sbjct: 76  FESEAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRDKVIRQ 135

Query: 78  REPMKDIRCGCRAECRVHIDCNSNRWYVKYFDDEHNHLLV 117
           R    + R GC+A   +  + NS +W +  F  EHNH L+
Sbjct: 136 R---AETRVGCKAMILIRKE-NSGKWVITKFVKEHNHSLM 171


>AT2G43280.1 | Symbols:  | Far-red impaired responsive (FAR1) family
           protein | chr2:17989739-17990861 FORWARD LENGTH=206
          Length = 206

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 6/129 (4%)

Query: 19  FSSREVAFLFYNMYARVKGFSARKDKLLR-DKNRQIIQQNFVCHKQGRRTNIFGDERTRK 77
           F S + A +FY+ Y+R  GF  R     R +K+ +I+ + F C+K+G   +I G +    
Sbjct: 28  FESEDAAKMFYDDYSRRLGFVMRVMSCRRSEKDGRILARRFGCNKEGHCVSIRG-KFGSV 86

Query: 78  REPMKDIRCGCRAECRVHIDCNSNRWYVKYFDDEHNHLLV---RANHAGLLPRHRRMQDA 134
           R+P    R GC+A   V  D  S +W +  F  EHNH LV   R     L  + +R+Q+ 
Sbjct: 87  RKPRPSTREGCKAMIHVKYD-RSGKWVITKFVKEHNHPLVVSPREARHTLDEKDKRIQEL 145

Query: 135 DIMHMNHMR 143
            I   N  R
Sbjct: 146 TIELRNKKR 154


>AT4G15090.1 | Symbols: FAR1 | FRS (FAR1 Related Sequences)
           transcription factor family | chr4:8614806-8617870
           FORWARD LENGTH=827
          Length = 827

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 24/181 (13%)

Query: 19  FSSREVAFLFYNMYARVKGFSAR-KDKLLRDKNRQIIQQNFVCHKQGRRTNIFGDERTRK 77
           F + E A++FY  YA+  GF+   K+     K +  I   F C + G          + +
Sbjct: 57  FDTHEAAYIFYQEYAKSMGFTTSIKNSRRSKKTKDFIDAKFACSRYGVTPESESSGSSSR 116

Query: 78  REPMKDIRCGCRAECRVHIDCNSNRWYVKYFDDEHNHLLVRANHAGLLPRHRRMQ----- 132
           R  +K   C      +   D    +W +  F  +HNH L+ A     L  H R+Q     
Sbjct: 117 RSTVKKTDCKASMHVKRRPD---GKWIIHEFVKDHNHELLPA-----LAYHFRIQRNVKL 168

Query: 133 ----DADIMHMNHMRRAQNGIRNIYGSFANQMGGYENVPFSIHA-MYNEVDKQRKKELPD 187
               + DI+H    R      + +Y   + Q GGY+N+   +   + ++VDK R   L +
Sbjct: 169 AEKNNIDILHAVSER-----TKKMYVEMSRQSGGYKNIGSLLQTDVSSQVDKGRYLALEE 223

Query: 188 G 188
           G
Sbjct: 224 G 224


>AT3G07500.1 | Symbols:  | Far-red impaired responsive (FAR1) family
           protein | chr3:2392387-2393709 FORWARD LENGTH=217
          Length = 217

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 60/129 (46%), Gaps = 12/129 (9%)

Query: 19  FSSREVAFLFYNMYARVKGFSARKDKLLRD-KNRQIIQQNFVCHKQGRRTNIFGDERTRK 77
           F S E A  FY+ YA   GF  R D   R  ++  ++ +  VC+K+G R +      +RK
Sbjct: 39  FESEEAAKSFYDNYATCMGFVMRVDAFRRSMRDGTVVWRRLVCNKEGFRRSRPRRSESRK 98

Query: 78  REPMKDIRCGCRAECRVHIDCNSNRWYVKYFDDEHNHLL------VRANHAGLLPRHRRM 131
             P    R GC+A   V  +  S  W V  F+ EHNH L      VR N    LP+    
Sbjct: 99  --PRAITREGCKALIVVKRE-KSGTWLVTKFEKEHNHPLLPLSPNVRRNFQ--LPQTPDE 153

Query: 132 QDADIMHMN 140
           +DA I  ++
Sbjct: 154 KDAKIRELS 162