Miyakogusa Predicted Gene

Lj0g3v0362259.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0362259.1 tr|G7KUA6|G7KUA6_MEDTR U11/U12 small nuclear
ribonucleoprotein 35 kDa protein OS=Medicago
truncatula,46.67,0.0000000001,RRM,RNA recognition motif domain;
seg,NULL; no description,Nucleotide-binding, alpha-beta plait;
RRM,CUFF.24962.1
         (358 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43370.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   327   1e-89
AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonu...    92   6e-19
AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:20...    63   2e-10
AT3G46020.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   5e-07

>AT2G43370.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:18013431-18015376 FORWARD LENGTH=333
          Length = 333

 Score =  327 bits (837), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 156/230 (67%), Positives = 184/230 (80%), Gaps = 4/230 (1%)

Query: 8   LNCVFYADSYHPIQAGSIDGTDIVPHDNAIYRAQLCSSIGLYDPFGDPKSIGDPYCTLFV 67
           +N VFYA SYHPIQAGSIDGTD+ PHDN + RA LC + GLYDP GD K++GDPYCTLFV
Sbjct: 9   VNKVFYATSYHPIQAGSIDGTDVAPHDNGVRRALLCYNAGLYDPSGDSKAVGDPYCTLFV 68

Query: 68  GRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVTGASCGYAFVEFEKDREMRRAYMDAHHL 127
           GRLS  TTEDT+R+VMSKYGR+KNLRLVR IVTGAS GY FVE+E ++EM RAY DAHH 
Sbjct: 69  GRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHS 128

Query: 128 IVDDCEIIVDYNRQRLMPGWIPXXXXXXXXXXXXXXQLRFGGREKPFRAPLKPIPYEELK 187
           ++D  EIIVDYNRQ+LMPGWIP              QLRFGGR++PFRAPL+PIP+E+LK
Sbjct: 129 LIDGREIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRDRPFRAPLRPIPHEDLK 188

Query: 188 KLGIPPPPEGRYMSRFQVPSPPRREKSLLDREEESHRRGSNDRSSVDMDE 237
           KLGI  PPEGRYMSR Q+PSPPRR+ S+ DREEE +R    ++SSV+ +E
Sbjct: 189 KLGIQLPPEGRYMSRTQIPSPPRRKGSVSDREEEYYR----EKSSVEREE 234


>AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear
           ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE
           LENGTH=427
          Length = 427

 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 61/109 (55%)

Query: 41  QLCSSIGLYDPFGDPKSIGDPYCTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVT 100
           +    +  YDP  DP + GDPY TLFV RL+  ++E  I++    YG +K + LV D +T
Sbjct: 116 KAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLT 175

Query: 101 GASCGYAFVEFEKDREMRRAYMDAHHLIVDDCEIIVDYNRQRLMPGWIP 149
               GYAF+E+   R+M+ AY  A    +D   ++VD  R R +P W P
Sbjct: 176 NKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRP 224


>AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 |
           chr1:20057012-20059508 FORWARD LENGTH=506
          Length = 506

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 9/100 (9%)

Query: 56  KSIGD--------PYCTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVTGASCGYA 107
           +SIGD        P   LFV +L+P+T ++ +  + S++G V +  ++RD  TG S  YA
Sbjct: 228 ESIGDIPEAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYA 287

Query: 108 FVEFEKDREMRRAYMDAHHLIVDDCEIIVDYNRQRLMPGW 147
           F+EFE      +AY    + ++DD  I VD++ Q +   W
Sbjct: 288 FIEFENKESCEQAYFKMDNALIDDRRIHVDFS-QSVSKLW 326


>AT3G46020.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:16912511-16913250 REVERSE LENGTH=102
          Length = 102

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 43/73 (58%)

Query: 65  LFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVTGASCGYAFVEFEKDREMRRAYMDA 124
           LFV RLS  TT+ ++R++ S +G++K  RL+RD  T    G+ F+ F+ + + R+A    
Sbjct: 9   LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68

Query: 125 HHLIVDDCEIIVD 137
              IVD   I V+
Sbjct: 69  DGKIVDGRLIFVE 81