Miyakogusa Predicted Gene

Lj0g3v0362209.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0362209.1 Non Chatacterized Hit- tr|D8RTC3|D8RTC3_SELML
Putative uncharacterized protein OS=Selaginella
moelle,43.36,4e-18,seg,NULL; zf-ribbon_3,NULL,CUFF.24955.1
         (110 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G44414.1 | Symbols:  | unknown protein; Has 29 Blast hits to ...   138   9e-34

>AT1G44414.1 | Symbols:  | unknown protein; Has 29 Blast hits to 29
           proteins in 12 species: Archae - 0; Bacteria - 4;
           Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:16847781-16848086 FORWARD LENGTH=101
          Length = 101

 Score =  138 bits (347), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 77/110 (70%), Gaps = 9/110 (8%)

Query: 1   MFFFFAGGIEQQVRQVVKSGVGRCINCSSRADLVEYDKVLKLFFVPVWRWPGKEQLLYCQ 60
           MFFFF GG+ QQVRQV+KSG G CI C S+ADLVEYDKV+KLFFVPVWRWPGK+ LL+C+
Sbjct: 1   MFFFFVGGLGQQVRQVLKSGAGTCIRCGSQADLVEYDKVIKLFFVPVWRWPGKDPLLHCR 60

Query: 61  DCKFLFPQSYSXXXXXXXXXXXXXXALRCRFCDKEVAAEFAFCPYCGSEL 110
           DC   FPQS S                 CRFCD+ V  EF FCP+CGS L
Sbjct: 61  DCDLFFPQSLSPPPVSLAT---------CRFCDRVVEPEFRFCPFCGSSL 101