Miyakogusa Predicted Gene

Lj0g3v0361479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0361479.1 Non Chatacterized Hit- tr|H9WPP8|H9WPP8_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda
GN=0,93.75,0.0000002,seg,NULL; coiled-coil,NULL,CUFF.24899.1
         (117 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17350.1 | Symbols:  | unknown protein; Has 119 Blast hits to...   167   1e-42

>AT2G17350.1 | Symbols:  | unknown protein; Has 119 Blast hits to 93
           proteins in 40 species: Archae - 0; Bacteria - 3;
           Metazoa - 18; Fungi - 12; Plants - 44; Viruses - 0;
           Other Eukaryotes - 42 (source: NCBI BLink). |
           chr2:7545703-7546148 REVERSE LENGTH=117
          Length = 117

 Score =  167 bits (423), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/117 (73%), Positives = 92/117 (78%)

Query: 1   MSLRIKAVVDKFVEELKEALDADIQDRIMKDREMQSYIQXXXXXXXXXXXXWKADLSXXX 60
           MSLRIK VVDKFVEELK+ALDADIQDRIMK+REMQSYI+            WKA+LS   
Sbjct: 1   MSLRIKLVVDKFVEELKQALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  XXXXXXXXXLKMERDNLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFTKAKK 117
                    LKMER+NLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRF+KAKK
Sbjct: 61  TEIARQEARLKMERENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFSKAKK 117