Miyakogusa Predicted Gene

Lj0g3v0361339.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0361339.2 Non Chatacterized Hit- tr|A5AP91|A5AP91_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,55.1,0.00000000006,domain in helicases and associated with
SANT,HAS subgroup; seg,NULL; SNF2 FAMILY
CHROMODOMAIN-HELICA,CUFF.24920.2
         (282 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi...   270   7e-73
AT3G24880.1 | Symbols:  | Helicase/SANT-associated, DNA binding ...    59   5e-09
AT3G24870.2 | Symbols:  | Helicase/SANT-associated, DNA binding ...    58   6e-09
AT3G24870.1 | Symbols:  | Helicase/SANT-associated, DNA binding ...    58   6e-09

>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
           protein / helicase domain-containing protein |
           chr3:4065636-4073992 FORWARD LENGTH=2055
          Length = 2055

 Score =  270 bits (690), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 156/288 (54%), Positives = 193/288 (67%), Gaps = 31/288 (10%)

Query: 1   MASKGPRFKFDHETKAKRQKTLEAPKEPRRPKTHWDHVLEEMVWLSKDFESERKWKLAHA 60
           MASK  + K D+E++AKRQKTLEAPKEPRRPKTHWDHVLEEM WLSKDFESERKWKLA A
Sbjct: 14  MASKSGKSKPDNESRAKRQKTLEAPKEPRRPKTHWDHVLEEMAWLSKDFESERKWKLAQA 73

Query: 61  KKVALKCSKGFLDQAT----RGEKKMKRLRKVALNISKDVKKFWTKIEKLVLYKHQMVLD 116
           KKVAL+ SKG LDQA+    + +++ +RLRKVALNISKD+KKFW K+EKLVLYKHQ+V +
Sbjct: 74  KKVALRASKGMLDQASREERKLKEEEQRLRKVALNISKDMKKFWMKVEKLVLYKHQLVRN 133

Query: 117 EKKKKALDKQLEFLLGQTERYSTMLAENLV---------------------DSTSADK-P 154
           EKKKKA+DKQLEFLLGQTERYSTMLAENLV                     D   A++ P
Sbjct: 134 EKKKKAMDKQLEFLLGQTERYSTMLAENLVEPYKQGQNTPSKPLLTIESKSDEERAEQIP 193

Query: 155 AEKNSAEHHIDYQSDAPDHDEEYGVQSXXXXXXXXXXXXXXXALITKEERQEELTALHDE 214
            E NS+      +S +P+ DE+Y ++S                  TK ERQEEL AL +E
Sbjct: 194 PEINSSA---GLESGSPELDEDYDLKSEDETEDDEDTIEEDEKHFTKRERQEELEALQNE 250

Query: 215 MNLPIEELLKRYAGEKGELERPQISQEHSEDGAKIARTGDA--DENGD 260
           ++LP+EELL+RY   +   E   +  E+ ++   ++R      DEN D
Sbjct: 251 VDLPVEELLRRYTSGRVSRETSPVKDENEDNLTSVSRVTSPVKDENQD 298


>AT3G24880.1 | Symbols:  | Helicase/SANT-associated, DNA binding
           protein | chr3:9086457-9095537 REVERSE LENGTH=1957
          Length = 1957

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 11/101 (10%)

Query: 13  ETKAKRQKTLEAPKEPR--RPKTHWDHVLEEMVWLSKDFESERKWKLAHA----KKVALK 66
           + K KR   L     P   R K+ WD VLEEM WL+ DF  ER WK+  A     +VAL 
Sbjct: 552 QAKKKRIAELSCGTAPVEVREKSQWDFVLEEMAWLANDFAQERLWKMTAAAQICHRVALT 611

Query: 67  CSKGFLDQATRGEKKMKRLRKVALNISKDVKKFWTKIEKLV 107
           C   F ++      + ++L+K+A  +S  + +FW+ +E  V
Sbjct: 612 CQLRFEER-----NQHRKLKKIASVLSNAILQFWSSVEAEV 647


>AT3G24870.2 | Symbols:  | Helicase/SANT-associated, DNA binding
           protein | chr3:9075237-9084278 REVERSE LENGTH=1899
          Length = 1899

 Score = 58.2 bits (139), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 11/101 (10%)

Query: 13  ETKAKRQKTLEAPKEPR--RPKTHWDHVLEEMVWLSKDFESERKWKLAHAK----KVALK 66
           + K KR   L     P   R K+ WD VLEEM WL+ DF  ER WK+  A     +VAL 
Sbjct: 547 QAKKKRIAELSCGTAPVEVREKSQWDFVLEEMAWLANDFAQERLWKMTAATQICHRVALT 606

Query: 67  CSKGFLDQATRGEKKMKRLRKVALNISKDVKKFWTKIEKLV 107
           C   F ++      + ++L+K+A  +S  + +FW+ +E  V
Sbjct: 607 CQLRFEER-----NQHRKLKKIASVLSYAILQFWSSVEAEV 642


>AT3G24870.1 | Symbols:  | Helicase/SANT-associated, DNA binding
           protein | chr3:9075237-9084278 REVERSE LENGTH=1907
          Length = 1907

 Score = 58.2 bits (139), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 11/101 (10%)

Query: 13  ETKAKRQKTLEAPKEPR--RPKTHWDHVLEEMVWLSKDFESERKWKLAHAK----KVALK 66
           + K KR   L     P   R K+ WD VLEEM WL+ DF  ER WK+  A     +VAL 
Sbjct: 552 QAKKKRIAELSCGTAPVEVREKSQWDFVLEEMAWLANDFAQERLWKMTAATQICHRVALT 611

Query: 67  CSKGFLDQATRGEKKMKRLRKVALNISKDVKKFWTKIEKLV 107
           C   F ++      + ++L+K+A  +S  + +FW+ +E  V
Sbjct: 612 CQLRFEER-----NQHRKLKKIASVLSYAILQFWSSVEAEV 647