Miyakogusa Predicted Gene

Lj0g3v0361339.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0361339.1 Non Chatacterized Hit- tr|A5AP91|A5AP91_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,51.18,5e-16,domain in helicases and associated with SANT,HAS
subgroup; seg,NULL; SNF2 FAMILY CHROMODOMAIN-HELICA,CUFF.24920.1
         (316 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi...   276   9e-75
AT3G24880.1 | Symbols:  | Helicase/SANT-associated, DNA binding ...    64   1e-10
AT3G24870.2 | Symbols:  | Helicase/SANT-associated, DNA binding ...    64   2e-10
AT3G24870.1 | Symbols:  | Helicase/SANT-associated, DNA binding ...    64   2e-10

>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
           protein / helicase domain-containing protein |
           chr3:4065636-4073992 FORWARD LENGTH=2055
          Length = 2055

 Score =  276 bits (707), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 173/329 (52%), Positives = 214/329 (65%), Gaps = 38/329 (11%)

Query: 1   MASKGPRFKFDHETKAKRQKTLEAPKEPRRPKTHWDHVLEEMVWLSKDFESERKWKLAHA 60
           MASK  + K D+E++AKRQKTLEAPKEPRRPKTHWDHVLEEM WLSKDFESERKWKLA A
Sbjct: 14  MASKSGKSKPDNESRAKRQKTLEAPKEPRRPKTHWDHVLEEMAWLSKDFESERKWKLAQA 73

Query: 61  KKVALKCSKGFLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMVLD 120
           KKVAL+ SKG LDQA+R E+K+KEEEQRLRKVALNISKD+KKFW K+EKLVLYKHQ+V +
Sbjct: 74  KKVALRASKGMLDQASREERKLKEEEQRLRKVALNISKDMKKFWMKVEKLVLYKHQLVRN 133

Query: 121 EKKKKALDKQLEFLLGQTERYSTMLAENLV---------------------DSTSADK-P 158
           EKKKKA+DKQLEFLLGQTERYSTMLAENLV                     D   A++ P
Sbjct: 134 EKKKKAMDKQLEFLLGQTERYSTMLAENLVEPYKQGQNTPSKPLLTIESKSDEERAEQIP 193

Query: 159 AEKNSAEHHIDYQSDAPDHDEEYGVQSXXXXXXXXXXXXXXXALITKEERQEELTALHDE 218
            E NS+      +S +P+ DE+Y ++S                  TK ERQEEL AL +E
Sbjct: 194 PEINSSA---GLESGSPELDEDYDLKSEDETEDDEDTIEEDEKHFTKRERQEELEALQNE 250

Query: 219 MNLPIEELLKRYAGEKGELERPQISQEHSEDGAKIARTGDA--DENGD-LSPVSKIGTND 275
           ++LP+EELL+RY   +   E   +  E+ ++   ++R      DEN D L+ V +    D
Sbjct: 251 VDLPVEELLRRYTSGRVSRETSPVKDENEDNLTSVSRVTSPVKDENQDNLASVGQDHGED 310

Query: 276 SSVVPG----------RRCDESNGDIATS 294
            + +            RR ++S G +A S
Sbjct: 311 KNNLAASEETEGNPSVRRSNDSYGHLAIS 339


>AT3G24880.1 | Symbols:  | Helicase/SANT-associated, DNA binding
           protein | chr3:9086457-9095537 REVERSE LENGTH=1957
          Length = 1957

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 14/92 (15%)

Query: 24  APKEPRRPKTHWDHVLEEMVWLSKDFESERKWKLAHAK----KVALKCSKGFLDQATRGE 79
           AP E R  K+ WD VLEEM WL+ DF  ER WK+  A     +VAL C   F +      
Sbjct: 566 APVEVRE-KSQWDFVLEEMAWLANDFAQERLWKMTAAAQICHRVALTCQLRFEE------ 618

Query: 80  KKMKEEEQRLRKVALNISKDVKKFWTKIEKLV 111
              + + ++L+K+A  +S  + +FW+ +E  V
Sbjct: 619 ---RNQHRKLKKIASVLSNAILQFWSSVEAEV 647


>AT3G24870.2 | Symbols:  | Helicase/SANT-associated, DNA binding
           protein | chr3:9075237-9084278 REVERSE LENGTH=1899
          Length = 1899

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 14/92 (15%)

Query: 24  APKEPRRPKTHWDHVLEEMVWLSKDFESERKWKLAHAK----KVALKCSKGFLDQATRGE 79
           AP E R  K+ WD VLEEM WL+ DF  ER WK+  A     +VAL C   F +      
Sbjct: 561 APVEVRE-KSQWDFVLEEMAWLANDFAQERLWKMTAATQICHRVALTCQLRFEE------ 613

Query: 80  KKMKEEEQRLRKVALNISKDVKKFWTKIEKLV 111
              + + ++L+K+A  +S  + +FW+ +E  V
Sbjct: 614 ---RNQHRKLKKIASVLSYAILQFWSSVEAEV 642


>AT3G24870.1 | Symbols:  | Helicase/SANT-associated, DNA binding
           protein | chr3:9075237-9084278 REVERSE LENGTH=1907
          Length = 1907

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 14/92 (15%)

Query: 24  APKEPRRPKTHWDHVLEEMVWLSKDFESERKWKLAHAK----KVALKCSKGFLDQATRGE 79
           AP E R  K+ WD VLEEM WL+ DF  ER WK+  A     +VAL C   F +      
Sbjct: 566 APVEVRE-KSQWDFVLEEMAWLANDFAQERLWKMTAATQICHRVALTCQLRFEE------ 618

Query: 80  KKMKEEEQRLRKVALNISKDVKKFWTKIEKLV 111
              + + ++L+K+A  +S  + +FW+ +E  V
Sbjct: 619 ---RNQHRKLKKIASVLSYAILQFWSSVEAEV 647