Miyakogusa Predicted Gene

Lj0g3v0360889.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0360889.1 Non Chatacterized Hit- tr|D8SH47|D8SH47_SELML
Putative uncharacterized protein OS=Selaginella moelle,38.71,5e-16,
,CUFF.24856.1
         (93 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16290.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   111   1e-25

>AT1G16290.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast, vacuole; EXPRESSED IN: 19 plant structures;
           EXPRESSED DURING: 11 growth stages; CONTAINS InterPro
           DOMAIN/s: Lytic transglycosylase-like, catalytic
           (InterPro:IPR008258); Has 171 Blast hits to 155 proteins
           in 40 species: Archae - 0; Bacteria - 54; Metazoa - 0;
           Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes -
           62 (source: NCBI BLink). | chr1:5570938-5573538 REVERSE
           LENGTH=419
          Length = 419

 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 71/92 (77%)

Query: 1   MEAMWNHPEIHKVWSKSKQKQGKVRFTHDEKKRPYLSRVEIKAVADIVLFKYLNTLKIKS 60
           ME MWN  EI K W+KSK+++GKVRF+ D +KRPYLSR E+KAVA+I++ KY +T  I+ 
Sbjct: 235 MEDMWNQSEICKEWTKSKEERGKVRFSQDGEKRPYLSRGELKAVAEIIVSKYFSTKGIRV 294

Query: 61  RVLCAIAEVASTRFVDGVEGRPGIMGIDYSTA 92
            ++CAIA+    RFV+G++   GI+G+DYSTA
Sbjct: 295 PLVCAIADTVCMRFVNGIKKHVGILGVDYSTA 326



 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 1  MEAMWNHPEIHKVWSKSKQKQG-KVRFTHDEKKRPYLSRVEIKAVADIVLFKYLNTLKIK 59
          +E MW  P +   W    + +G KV  + D   +PYL++ E++AV+DI + ++ +++ + 
Sbjct: 17 LEEMWMDPAVSAEWIDVGETKGQKVHLSRDPDGQPYLTQTEMRAVSDITVRRHFDSI-LD 75

Query: 60 SRVLCAIAEVASTR 73
          S ++CAIAE+ S R
Sbjct: 76 SEMICAIAELESDR 89