Miyakogusa Predicted Gene

Lj0g3v0360879.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0360879.1 Non Chatacterized Hit- tr|D7SWW1|D7SWW1_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,61.19,2e-17,
,CUFF.24855.1
         (67 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16290.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    90   3e-19

>AT1G16290.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast, vacuole; EXPRESSED IN: 19 plant structures;
           EXPRESSED DURING: 11 growth stages; CONTAINS InterPro
           DOMAIN/s: Lytic transglycosylase-like, catalytic
           (InterPro:IPR008258); Has 171 Blast hits to 155 proteins
           in 40 species: Archae - 0; Bacteria - 54; Metazoa - 0;
           Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes -
           62 (source: NCBI BLink). | chr1:5570938-5573538 REVERSE
           LENGTH=419
          Length = 419

 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 51/67 (76%)

Query: 1   MYFGAAYVAWLSEYEGRERAPQFFVQAYFVGPKNVNPQDVSPLWLKFEESLSKYEETKRS 60
           MYFG AY+ WLSEYEG +R+ QF VQAY  GP +V+ ++  PLWLKFE++LS YEE+KR 
Sbjct: 353 MYFGVAYLVWLSEYEGSQRSNQFIVQAYMKGPDHVDLEESCPLWLKFEQALSYYEESKRD 412

Query: 61  GDSCSIM 67
             SC I+
Sbjct: 413 SGSCVIL 419



 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 7/66 (10%)

Query: 1   MYFGAAYVAWLSEYEGRERAPQFFVQAYFVGPKNVNPQDVSPLW---LKFEESLSKYEET 57
           +YFGAAY+ WL++Y+  +R+ +F V+AY  G K    +   P W   L  +ESL     +
Sbjct: 143 VYFGAAYLKWLTDYQNNQRSEEFVVRAYNGGTKKATHKSTLPYWKRYLAVKESLP----S 198

Query: 58  KRSGDS 63
           ++ GD+
Sbjct: 199 RKHGDA 204