Miyakogusa Predicted Gene

Lj0g3v0360779.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0360779.1 tr|D7L8B8|D7L8B8_ARALL Predicted protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_671772
PE,40,4e-19,seg,NULL; DUF4005,Domain of unknown function DUF4005;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NUL,gene.g28344.t1.1
         (212 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03040.3 | Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406 R...   119   1e-27
AT5G03040.2 | Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406 R...   119   1e-27
AT5G03040.1 | Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406 R...   119   1e-27
AT3G09710.1 | Symbols: IQD1 | IQ-domain 1 | chr3:2976834-2978900...    92   3e-19
AT3G09710.2 | Symbols: IQD1 | IQ-domain 1 | chr3:2976834-2978900...    91   4e-19
AT3G52290.1 | Symbols: IQD3 | IQ-domain 3 | chr3:19394441-193961...    87   1e-17

>AT5G03040.3 | Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406
           REVERSE LENGTH=461
          Length = 461

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/215 (40%), Positives = 108/215 (50%), Gaps = 18/215 (8%)

Query: 1   MFMDPTNPSWGWSWLERWMAGAECQNLTAKEKN-DQSSAKSSSRMITSAEISKSFARFQL 59
           MFMDP+NP+WGWSWLERWMAG   ++   ++ N +  +A S    I   E +KS  R   
Sbjct: 256 MFMDPSNPTWGWSWLERWMAGRPLESSEKEQSNSNNDNAASVKGSINRNEAAKSLTR--- 312

Query: 60  NSENHSPTASQNPGSPNFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRH 119
           N      T S   G+P  +                                      RRH
Sbjct: 313 NGSTQPNTPSSARGTPRNKNSFFSPPTPSRLNQSSRKSNDDDSKSTISVLSER---NRRH 369

Query: 120 SIAGSTIRDDESLAXXXXXXXXYMVPTKSAKAKSRMQSPLAAENGTPEKGGF---GTAKK 176
           SIAGS++RDDESLA        YMVPTKSA+A+ + QSPL     T E  GF    +AKK
Sbjct: 370 SIAGSSVRDDESLA-GSPALPSYMVPTKSARARLKPQSPLGGT--TQENEGFTDKASAKK 426

Query: 177 RLSFPASPA--RPRRHSGPPKVDSSLNAEITVGNG 209
           RLS+P SPA  +PRR S PPKV+S     +TV NG
Sbjct: 427 RLSYPTSPALPKPRRFSAPPKVES---GGVTVTNG 458


>AT5G03040.2 | Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406
           REVERSE LENGTH=461
          Length = 461

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/215 (40%), Positives = 108/215 (50%), Gaps = 18/215 (8%)

Query: 1   MFMDPTNPSWGWSWLERWMAGAECQNLTAKEKN-DQSSAKSSSRMITSAEISKSFARFQL 59
           MFMDP+NP+WGWSWLERWMAG   ++   ++ N +  +A S    I   E +KS  R   
Sbjct: 256 MFMDPSNPTWGWSWLERWMAGRPLESSEKEQSNSNNDNAASVKGSINRNEAAKSLTR--- 312

Query: 60  NSENHSPTASQNPGSPNFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRH 119
           N      T S   G+P  +                                      RRH
Sbjct: 313 NGSTQPNTPSSARGTPRNKNSFFSPPTPSRLNQSSRKSNDDDSKSTISVLSER---NRRH 369

Query: 120 SIAGSTIRDDESLAXXXXXXXXYMVPTKSAKAKSRMQSPLAAENGTPEKGGF---GTAKK 176
           SIAGS++RDDESLA        YMVPTKSA+A+ + QSPL     T E  GF    +AKK
Sbjct: 370 SIAGSSVRDDESLA-GSPALPSYMVPTKSARARLKPQSPLGGT--TQENEGFTDKASAKK 426

Query: 177 RLSFPASPA--RPRRHSGPPKVDSSLNAEITVGNG 209
           RLS+P SPA  +PRR S PPKV+S     +TV NG
Sbjct: 427 RLSYPTSPALPKPRRFSAPPKVES---GGVTVTNG 458


>AT5G03040.1 | Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406
           REVERSE LENGTH=461
          Length = 461

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/215 (40%), Positives = 108/215 (50%), Gaps = 18/215 (8%)

Query: 1   MFMDPTNPSWGWSWLERWMAGAECQNLTAKEKN-DQSSAKSSSRMITSAEISKSFARFQL 59
           MFMDP+NP+WGWSWLERWMAG   ++   ++ N +  +A S    I   E +KS  R   
Sbjct: 256 MFMDPSNPTWGWSWLERWMAGRPLESSEKEQSNSNNDNAASVKGSINRNEAAKSLTR--- 312

Query: 60  NSENHSPTASQNPGSPNFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRH 119
           N      T S   G+P  +                                      RRH
Sbjct: 313 NGSTQPNTPSSARGTPRNKNSFFSPPTPSRLNQSSRKSNDDDSKSTISVLSER---NRRH 369

Query: 120 SIAGSTIRDDESLAXXXXXXXXYMVPTKSAKAKSRMQSPLAAENGTPEKGGF---GTAKK 176
           SIAGS++RDDESLA        YMVPTKSA+A+ + QSPL     T E  GF    +AKK
Sbjct: 370 SIAGSSVRDDESLA-GSPALPSYMVPTKSARARLKPQSPLGGT--TQENEGFTDKASAKK 426

Query: 177 RLSFPASPA--RPRRHSGPPKVDSSLNAEITVGNG 209
           RLS+P SPA  +PRR S PPKV+S     +TV NG
Sbjct: 427 RLSYPTSPALPKPRRFSAPPKVES---GGVTVTNG 458


>AT3G09710.1 | Symbols: IQD1 | IQ-domain 1 | chr3:2976834-2978900
           REVERSE LENGTH=454
          Length = 454

 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 104/227 (45%), Gaps = 44/227 (19%)

Query: 1   MFMDPTNPSWGWSWLERWMAG------AECQNLTAKEKNDQSSAK-SSSRMITSAEISKS 53
           MFMDP+NP+WGWSWLERWMAG       + QN T    ND SS K S++R     E +KS
Sbjct: 249 MFMDPSNPTWGWSWLERWMAGRPWESSEKEQNTT---NNDNSSVKNSTNRNSQGGETAKS 305

Query: 54  FARFQLNSENH------SPTASQNPGSPNFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 107
             R +LNS         S TA++NP                                   
Sbjct: 306 SNRNKLNSSTKPNTPSASSTATRNP-------------------RKKRPIPSSIKSKSSD 346

Query: 108 XXXXXXXXERRHSIAGSTIRDDESLAXXXXXXXXYMVP-TKSA--KAKSRMQSPLAAENG 164
                    RR SIA  ++ DDE+L+         ++P TKSA  K KS+  S +A    
Sbjct: 347 DEAKSSERNRRPSIARPSVSDDETLSSSTARRSSNLIPTTKSARGKPKSQTSSRVAVTTS 406

Query: 165 TPEKGGF----GTAKKRLSFPASPA-RPRRHSGPPKVDSS-LNAEIT 205
           T E+         AKKRLS  ASPA +PRR S PPKV+   L AE T
Sbjct: 407 TTEESSILPEKAPAKKRLSTSASPAPKPRRSSAPPKVEKGVLKAERT 453


>AT3G09710.2 | Symbols: IQD1 | IQ-domain 1 | chr3:2976834-2978900
           REVERSE LENGTH=468
          Length = 468

 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 104/227 (45%), Gaps = 44/227 (19%)

Query: 1   MFMDPTNPSWGWSWLERWMAG------AECQNLTAKEKNDQSSAK-SSSRMITSAEISKS 53
           MFMDP+NP+WGWSWLERWMAG       + QN T    ND SS K S++R     E +KS
Sbjct: 263 MFMDPSNPTWGWSWLERWMAGRPWESSEKEQNTT---NNDNSSVKNSTNRNSQGGETAKS 319

Query: 54  FARFQLNSENH------SPTASQNPGSPNFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 107
             R +LNS         S TA++NP                                   
Sbjct: 320 SNRNKLNSSTKPNTPSASSTATRNP-------------------RKKRPIPSSIKSKSSD 360

Query: 108 XXXXXXXXERRHSIAGSTIRDDESLAXXXXXXXXYMVP-TKSA--KAKSRMQSPLAAENG 164
                    RR SIA  ++ DDE+L+         ++P TKSA  K KS+  S +A    
Sbjct: 361 DEAKSSERNRRPSIARPSVSDDETLSSSTARRSSNLIPTTKSARGKPKSQTSSRVAVTTS 420

Query: 165 TPEKGGF----GTAKKRLSFPASPA-RPRRHSGPPKVDSS-LNAEIT 205
           T E+         AKKRLS  ASPA +PRR S PPKV+   L AE T
Sbjct: 421 TTEESSILPEKAPAKKRLSTSASPAPKPRRSSAPPKVEKGVLKAERT 467


>AT3G52290.1 | Symbols: IQD3 | IQ-domain 3 | chr3:19394441-19396196
           FORWARD LENGTH=430
          Length = 430

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 94/211 (44%), Gaps = 38/211 (18%)

Query: 2   FMDPTNPSWGWSWLERWMAGA--ECQNLTAKEKNDQSSAKSSSRMITSAEISKSFARFQL 59
           FMDP NP WGWSWLERWMA    E  +LT     D +   SS+R + S  +S+   R   
Sbjct: 248 FMDPNNPHWGWSWLERWMAARPNENHSLTP----DNAEKDSSARSVASRAMSEMIPR--- 300

Query: 60  NSENHSPTASQNPGSPNFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRH 119
             +N SP       +PN                                        RRH
Sbjct: 301 -GKNLSPRGK----TPN----------SRRGSSPRVRQVPSEDSNSIVSFQSEQPCNRRH 345

Query: 120 SIAGS--TIRDDESLAXXXXXXX-XYMVPTKSAKAKSRMQ--SPLAAENGTPEKGGFGTA 174
           S  GS  + RDDES           YM PT++AKA++R    SPL++E          TA
Sbjct: 346 STCGSIPSTRDDESFTSSFSQSVPGYMAPTQAAKARARFSNLSPLSSEK---------TA 396

Query: 175 KKRLSFPASPARPRRHSGPPKVDSSLNAEIT 205
           KKRLSF  SP   RR SGPPK++S++  + T
Sbjct: 397 KKRLSFSGSPKTVRRFSGPPKLESNVTKKDT 427