Miyakogusa Predicted Gene

Lj0g3v0360299.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0360299.1 Non Chatacterized Hit- tr|J3MA83|J3MA83_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB05G3,85.71,0.0000000000002,seg,NULL; no
description,NULL,CUFF.24803.1
         (187 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20130.1 | Symbols: PTAC14 | plastid transcriptionally active...   172   2e-43

>AT4G20130.1 | Symbols: PTAC14 | plastid transcriptionally active 14
           | chr4:10878914-10881697 FORWARD LENGTH=483
          Length = 483

 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 120/192 (62%), Gaps = 9/192 (4%)

Query: 3   SSSFHLYQPTHCFFSNTQFTGLRHGFFCRP-----TYSHAQNKVQPIK-ASVAAPPFPLF 56
           +SS  L   T+ F S  Q  G  +G    P          QN V+PIK AS+   PFPLF
Sbjct: 2   ASSVSLQFLTNTFISKPQ--GFCNGIVSAPRPRSNLLRDRQNGVRPIKVASIETQPFPLF 59

Query: 57  Q-PPKVEEPTSELEPADPDFYRIGYVRSMRAYGIDFKEGPDGFGVYASKDVEPLRRPRVI 115
           Q P   E  +SELE ADPDFY+IGYVRS+RAYG++FKEGPDGFGVYASKD+EP RR RVI
Sbjct: 60  QSPASEESSSSELETADPDFYKIGYVRSVRAYGVEFKEGPDGFGVYASKDIEPRRRARVI 119

Query: 116 MEIPLELMLTISKKLPWMXXXXXXXXXXXXXXXXNSTNPETDXXXXXXXXXXYSFDCQEN 175
           MEIPLELM+TI +K PWM                NST+PE D          +SFD  ++
Sbjct: 120 MEIPLELMITIRQKHPWMFFPDIVPIGHPIFDIINSTDPEIDWDIRLACLLLFSFDRDDH 179

Query: 176 FWQLYGDFLPSA 187
           FW+LYGDFLP+A
Sbjct: 180 FWRLYGDFLPAA 191